Sample 3300009596

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Sample 3300009596

3300009596: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched

Overview

Basic Information
IMG/M Taxon OID	3300009596 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127784 \| Ga0105156
Sample Name	Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	78762855
Sequencing Scaffolds	14
Novel Protein Genes	15
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Nevada, Gerlach, Sandy's Spring West
Coordinates	Lat. (^o)	40.653	Long. (^o)	-119.3749	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F060592	Metagenome	132	Y
F063403	Metagenome / Metatranscriptome	129	N
F068875	Metagenome / Metatranscriptome	124	N
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F087248	Metagenome / Metatranscriptome	110	Y
F088087	Metagenome	109	N
F104050	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105156_1000085	Not Available	13712	Open in IMG/M
Ga0105156_1000137	Not Available	11092	Open in IMG/M
Ga0105156_1000246	Not Available	9277	Open in IMG/M
Ga0105156_1000382	Not Available	7714	Open in IMG/M
Ga0105156_1003976	Not Available	2162	Open in IMG/M
Ga0105156_1004290	Not Available	2051	Open in IMG/M
Ga0105156_1004784	Not Available	1895	Open in IMG/M
Ga0105156_1004960	All Organisms → Viruses → Predicted Viral	1849	Open in IMG/M
Ga0105156_1006439	All Organisms → Viruses → Predicted Viral	1516	Open in IMG/M
Ga0105156_1007811	All Organisms → Viruses → Predicted Viral	1301	Open in IMG/M
Ga0105156_1008722	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1196	Open in IMG/M
Ga0105156_1024855	Not Available	534	Open in IMG/M
Ga0105156_1025252	Not Available	528	Open in IMG/M
Ga0105156_1025269	Not Available	527	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105156_1000085	Ga0105156_10000853	F063403	LIVLVDSNPEKEDLNLEEAMFLMEQNISRAEALNALRVAIRSVRRSPIKLPFGDDERFFIEIRIPRFAERLDLQMAAQLMLAGLGGSERLVAALPSLITSFRLPAETESGEIMQAVYNAEPLPDIPVLNLTPADLFSDSSDFNATPMLMTMIITALMELSGRTQTVAAGVNELLELFPGTNSNSANILEQGSSRVSGNQ*
Ga0105156_1000137	Ga0105156_10001375	F084856	LTEVLYFHDGIIRPAERGDVMPNVSDLIIVTHIYSKSHLEALSETLPEWRKLAPSARILVGYYANRFQASEFGTLLAENVELVPVHNSSYGAAYDTLLERTIGQPILILAPYAIPKEWFIGAHGSLFSWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGTILVRARPGAYLLYNALAAGYPVMTLARNCNPVRYVKRADKKAEKW*
Ga0105156_1000246	Ga0105156_10002466	F104050	MSEVKKCIIRLRSYCVVYDSLVNEEKQKYGRKEYVVTYCGICIKSYYAKAKMRLINKFSVVNTL*
Ga0105156_1000382	Ga0105156_10003822	F060592	MPREELDPRLKELLDKDPVAFFHALADLYVQGLDPKAMGIIPSNPVTKKVKSPDRWAKQQIENAVAAASDWLDGVKNPARNPIEAALDKKDKWIDRLTAAIKDDKWAKNLKKVSPGEIIEVAEKVGTSAYATGITARESKIKKRVAELQPLVQAVSDAIQAMPDKTDADREKRLLTARKLMIEVGKKRAGA*
Ga0105156_1003976	Ga0105156_10039765	F088087	MQSAMLRASDGSVWRAIGVSQSGCEICRRKAAAIYECVEGKWAGVRVVACPEHAQDAIEKFIAGGEE*
Ga0105156_1004290	Ga0105156_10042903	F060592	MSQYIIFAVNPFFHGDVMPHEELDPRLKELLDKDPAAFFHALADLYVQGLDPKAMGIIPDNPVTKKVKSPDRWAKQQIENAVAAASDWLDGVKNPSRNPIEAALDKKDKWIDRLTTAIKEDKWAKNLKKVSPGEIVEVAEKVGTSAYATGITARESKIKKRVAELQPLVQAVSDTIQAMPDKTDADREKRLLMARKLMLEVGKKRAGA*
Ga0105156_1004784	Ga0105156_10047843	F104050	VSEARKCIIRLRKQCVVYDNLVADEQQKYGSKEYVVTYCGMCIKSYYAKAKMRLINKYSVVNTL*
Ga0105156_1004960	Ga0105156_10049603	F068875	LITPRLDDVSSERAEAITEEIGATTYYVRDAARTITATVGQLPTEWAQRVAELRCQANLGVFLIDANGTIWGRKVDTNTGVAGAALPVVPSSIDVRFAFPSYSSVQKHTITFQLPFSLADYEIIPLWNDASYLDYVAPQPVGFRVYPSGGDWVVFLFSKYHAPNGTIVVPIAGATPVNAIEIYDENGTTLVAQATSDLGGGRYKLNNALTSGTRYILDCTAVTNPPRSAFDWVSIRVPFRA*
Ga0105156_1006439	Ga0105156_10064392	F104050	VSEVKKCIIRLRKHCVVYDGLISDERQKYGSKDYVITYCSMCIKTFYAKAKHKLVNKFSVVNTL*
Ga0105156_1007811	Ga0105156_10078112	F104050	MIGKKCIIRLRKHCVVYDSLISDEQQKYGTKDYVITYCSMCIKAFYAKAKIKLVNKYSVVNTL*
Ga0105156_1008722	Ga0105156_10087222	F013155	MELYQAVVVAIALANLAVTAWLLKLLLPIWRGLREVVFNLDNWDFDKLAQKFLSGEKPMAESVIVKTSENKEGYREISVTRVYKKPLDAKEVWEGIVRQMAEKMQ*
Ga0105156_1017521	Ga0105156_10175212	F087248	HNGAPLGTGWQELVPPTTLPGAANTWGRIEIPASGDGYYDQYRIEVQRTAGSNYILTSKIIGVR*
Ga0105156_1024855	Ga0105156_10248553	F104050	MGAVSEKKCIIRLRKHCVVFESIVDDEKQKYGTKDYVITYCSMCIKTFYAKAKHKLVNKFSVVNTL*
Ga0105156_1025252	Ga0105156_10252522	F080678	MFARKIDAKTTPIEAVYNDWERVWLSAETIKRFLAISGLTAPPYNLRVEDFLKFPHLRGMAARRFVRKLRQFGVTWSWNDGVVRRGVLQAVGYKLREIEEFEHNCIFGRKEVSVNV*
Ga0105156_1025269	Ga0105156_10252691	F060592	MGIIPSNPVTKKVKSPDRWAKQQIENAVAAKDDWLDGVKNPARNPIEAALDKKDKWIDRLTAAIKDDKWAKNLKKVSPAEIVEVAEKVGTTAYATGISARESKIKKRVSELQPLVQAVSDTIQAMPDKTDADREKRLLMARKLMLEVGKKRAGA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.