Sample 3300005966

Basic Information
IMG/M Taxon OID	3300005966 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0054574 \| Ga0081478
Sample Name	Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	71045757
Sequencing Scaffolds	21
Novel Protein Genes	24
Associated Families	15

Dataset Contents

Total Genome Size

71045757

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Desulfurobacteriales → Desulfurobacteriaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV2	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae

All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Desulfurobacteriales → Desulfurobacteriaceae

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV2

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Ecosystem Assignment (GOLD)

Name

Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.5340836	Long. (^o)	-110.7978895	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.5340836

Long. (^o)

-110.7978895

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F063403	Metagenome / Metatranscriptome	129	N
F069506	Metagenome	124	N
F073601	Metagenome / Metatranscriptome	120	Y
F077497	Metagenome / Metatranscriptome	117	Y
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F100050	Metagenome / Metatranscriptome	103	Y
F104114	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0081478_121974	Not Available	598	Open in IMG/M
Ga0081478_123410	Not Available	1106	Open in IMG/M
Ga0081478_129252	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1092	Open in IMG/M
Ga0081478_129384	Not Available	2529	Open in IMG/M
Ga0081478_134092	All Organisms → cellular organisms → Bacteria	4871	Open in IMG/M
Ga0081478_136885	Not Available	1891	Open in IMG/M
Ga0081478_140204	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	2888	Open in IMG/M
Ga0081478_141957	Not Available	10122	Open in IMG/M
Ga0081478_144003	Not Available	2593	Open in IMG/M
Ga0081478_146020	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Desulfurobacteriales → Desulfurobacteriaceae	2081	Open in IMG/M
Ga0081478_146622	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
Ga0081478_146707	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1903	Open in IMG/M
Ga0081478_147787	Not Available	980	Open in IMG/M
Ga0081478_148440	Not Available	2451	Open in IMG/M
Ga0081478_150364	Not Available	3039	Open in IMG/M
Ga0081478_150552	Not Available	1306	Open in IMG/M
Ga0081478_151643	Not Available	2037	Open in IMG/M
Ga0081478_153999	Not Available	1182	Open in IMG/M
Ga0081478_154034	Not Available	2640	Open in IMG/M
Ga0081478_158397	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	7104	Open in IMG/M
Ga0081478_167978	All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV2	22630	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081478_121974	Ga0081478_1219742	F069506	IEEAWQELLQEADAEDYPLEEYLEHYRKYWDDPTFPNDIPEIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVYYEDIVRLVTRLLNQIQSALTTE*
Ga0081478_123410	Ga0081478_1234101	F021443	MKYLLNDEKLTFAFGFFNVTCSNYDYNCSYYQINGILPFAVINLALEIAKQQKRKSIISKKRKPIIHLLNYIDILNFNFNSHKFEITLPLRNDYNRQLTRNLYLYRRSHHRRYYEDFYGDSLKVIENENLCIIRLEYSFASIIQPKNSSLATVLMHILEKDEIDTIDASGIIYYCVFLM*
Ga0081478_129252	Ga0081478_1292522	F077497	MDKEQIDKLEEILERHLLGKTNNSEYELTKMQVIVLYLIYQKLKSIDERLNAIDQSLFEIANPGLFEK*
Ga0081478_129384	Ga0081478_1293842	F069506	MQLEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDTCFPNDIPELVMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVIHYEDIVRLVTKLLNQIQSALANA*
Ga0081478_129384	Ga0081478_1293843	F100012	MDREKVLQALREVQAEYDIKDLDRLVREAWEEGDVLYAEIVVELIERAVEILFNQHFLWVHIVESEDCEEWIPDGWYSFVAVHPETGQCLTFFNDPVNRRKSASFRARIRNADDAVDAVMRLAELIEQNLKSRAVE*
Ga0081478_134092	Ga0081478_1340925	F104114	MERLRLWLSRTQDEKFTAAERELKGAIVARYDEFADEWSLVRSVEDIAPSALAEIVIQTVEALLGLQWRLEWDYDADADDMVLGSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRGQVSLIKEVK*
Ga0081478_136885	Ga0081478_1368854	F092976	MAMTVQEILHWKHELRQVLQEFLQVWQKCPKCGAKWSDIAWDAESDHEWLIVECKAGHLFKADEEFWLFDYNGSGVYVPSEETEMTEVSVHAG*
Ga0081478_140204	Ga0081478_1402044	F038745	MQISLAFSAYYPLCLGGTPCDLAEAVERLIRRAASAREAEELLEALNGRVRLEELGLPAPALEALAEELGPEPPWLDALAASFFRLYLGLGKRRRVDGRDLALALCLWAQKKRREDPRNPLWRAAELEPDRLYTEEEAREALKMEERLFRRLWRRALAFHRGEKAYGFQLILAALSLMATPSRSV*
Ga0081478_141957	Ga0081478_1419574	F063403	MEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSVITAFRLPAEDDDGNFVQAIYNAEPLPDIPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPGDQ*
Ga0081478_144003	Ga0081478_1440032	F100050	MDAVVRYVVATVLAVAGGYVGYHFVSSVPFGVVGNVLFVGALFGLVAGLFGFTGFFGNVVNVFLLSFPLWFLLPGDWFIIWTGGNVGYAFGNLFGQLARLSAVNKIGVKAL*
Ga0081478_146020	Ga0081478_1460203	F021443	MKCLLNSEKLTFVFGYFCVTCNNYDYSCYQNNGILSFAVMDLAFKIIKQQKRKSIILKKRKPIIHLLNYIDTLNFNSHKFDITLSSKNNYKTQLIYNLYSYRNSHLRRYYEGFYKDSLKVIERENLCIIKPEYDFASSIQPKNLNLAAMLMYILEKGEIDMIAADGIIFYCVFLM*
Ga0081478_146622	Ga0081478_1466223	F073601	QGRLVGAGCPLPGVSLALGRAMLQAKATCLVMALPAKGREDQRMFGRLRFAWRCAIKIIACGNIIRALPVEQKALAGMGILRQQG*
Ga0081478_146707	Ga0081478_1467072	F013155	MELYQVIIVVIALANLAVTVWLLQLLLPVWRELRRIVFALDHFDFDEISRKFLNNEKPLAETIDVKVSEKRDEGYKELTVTRVYKKPLDPREIQEGFVRQMAEKLQ*
Ga0081478_147787	Ga0081478_1477872	F086364	EDEPTTFAEFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLQLVQQA*
Ga0081478_148440	Ga0081478_1484403	F092976	MMQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDCDDYSDAGVYAPSEETEMTEVSAHAG*
Ga0081478_148440	Ga0081478_1484407	F088087	VLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFTAGGDE*
Ga0081478_150364	Ga0081478_1503641	F021443	MKCLLNNEKLSFIFRNTLVTCCNYGDNYYQINGILPFAVTDLALKIRKQQKRKSIILKKRKPIVHLLNYIDILNSNFNSKKFDIDFFLKNEHKTQLIYNLYLYRNLHRTGYYENIYKDGLKVIERKNLCIIRLEDDFPSVIQPKNLNLVTMLMHILQKEEIDMLEGNGIVFYCVFLM*
Ga0081478_150552	Ga0081478_1505521	F043237	MDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFKVYCLASKPLEIPHMPLKLHYDEKIQRLRLLAQKSFINDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVIEALKRHGLKPKDAMTDYHRYVLKFSDVLRKKRQKAHKR*
Ga0081478_151643	Ga0081478_1516433	F084856	VLYFHEDIKPMERGDAMSDLSNLMIVTHLYTKEHAEALSQTLPEWRKLAPSSQIIVGYYQSRFQPSDFSNLMHDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGASGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPCNCNPVRYVKPETLTYRKPDEPSGRR*
Ga0081478_153999	Ga0081478_1539992	F086364	MEREKIIAALETAFADISGAEYEDEPTTFAEFLESFAKLRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDVLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQVVEYFLRLVQQA*
Ga0081478_153999	Ga0081478_1539993	F069506	MQLEQQTFTEEQIKQAIEEVWQELLQETDAENYSLEEYLEDYRKYWYDTCFPNDIPELIMRTVEKLIGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVIYYEDIVRLVTKLLNQIQSALANA*
Ga0081478_154034	Ga0081478_1540343	F021443	MKYLLNSEKLTFVFRSSYVTCYNYGYGYYQNDGILSFAVMDLALKIIKQQKRKSIILKKRKPIIHLLNYVDTLNSNFNSNKFDIILSLKNNYKTQLIYNLYSYRNSHLRRYYEGFYEDSLKVIERENLCIIRLEYDYANSIQPKNLNLAAMLMYILDKEEIDMMIDADGIIFYCLFLM*
Ga0081478_158397	Ga0081478_1583975	F013155	MEIQIILATVAAANLAVTIWLLRLLLPIWRTLKKVMNAVDQFDFDKLAKQFLGNETPVAESVAVKTTEKKEEGYREISIIRTYKKPLSPKEVSENIVRQMAQEMQ*
Ga0081478_167978	Ga0081478_1679783	F100050	MGITVFPMDAVVRYVIAAVLAVAGGYVGYHFVPSVPFGVVGNVLFVGALFGLVAGLFRFTGFFGNVVNAFLLSFPLWFLLPGEWFIIWTGGNVGYAFGNVFGQLAVLSTMRKIEAKAL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005966: Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences