NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020145

3300020145: Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 85_MetaG



Overview

Basic Information
IMG/M Taxon OID3300020145 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111485 | Gp0220149 | Ga0197144
Sample NameSediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 85_MetaG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size80294486
Sequencing Scaffolds2
Novel Protein Genes3
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springsediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Nevada
CoordinatesLat. (o)40.6614Long. (o)-119.3661Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080678Metagenome115N
F088087Metagenome109N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0197144_102606Not Available3602Open in IMG/M
Ga0197144_119159Not Available706Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0197144_102606Ga0197144_1026069F080678MFVKKVDVRTVPITQAYENWECIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVQKLRRLGVTWSWNNDAMRRSILLAIGYRLLEIEEFEHYRIFGRKEVSVNV
Ga0197144_119159Ga0197144_1191592F088087MMMLEVTDGSVWKEVGVSKSSCEICGRKGSARIYECVEGKWAGVRVVACPEHKEQAIEKFICGGEE
Ga0197144_119159Ga0197144_1191593F080678MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVKKLRRLGVTWSWNDYSVRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV

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