Sample 3300006065

Basic Information
IMG/M Taxon OID	3300006065 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116709 \| Gp0121445 \| Ga0081425
Sample Name	Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics
Sequencing Status	Permanent Draft
Sequencing Center	Stanford University
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics

Sequencing Status

Permanent Draft

Sequencing Center

Stanford University

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	107195016
Sequencing Scaffolds	21
Novel Protein Genes	34
Associated Families	24

Dataset Contents

Total Genome Size

107195016

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	10
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

Ecosystem Assignment (GOLD)
Name	Mini-Metagenome - Microbial Communities From The Yellowstone National Park
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Ecosystem Assignment (GOLD)

Name

Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Mini-Metagenome - Microbial Communities From The Yellowstone National Park

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.564833	Long. (^o)	-110.86325	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.564833

Long. (^o)

-110.86325

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000353	Metagenome / Metatranscriptome	1246	Y
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y
F014730	Metagenome / Metatranscriptome	260	Y
F019254	Metagenome	231	Y
F021443	Metagenome / Metatranscriptome	219	Y
F033339	Metagenome / Metatranscriptome	177	N
F038584	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F044249	Metagenome / Metatranscriptome	154	N
F052439	Metagenome / Metatranscriptome	142	Y
F054062	Metagenome / Metatranscriptome	140	N
F068874	Metagenome / Metatranscriptome	124	N
F069506	Metagenome	124	N
F070754	Metagenome / Metatranscriptome	122	Y
F076662	Metagenome / Metatranscriptome	118	Y
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F103256	Metagenome	101	Y
F104114	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0081425_120395	All Organisms → cellular organisms → Bacteria	5568	Open in IMG/M
Ga0081425_121746	Not Available	874	Open in IMG/M
Ga0081425_123169	Not Available	3833	Open in IMG/M
Ga0081425_124592	Not Available	1250	Open in IMG/M
Ga0081425_125461	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
Ga0081425_130494	Not Available	2476	Open in IMG/M
Ga0081425_131042	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	136948	Open in IMG/M
Ga0081425_134151	Not Available	5264	Open in IMG/M
Ga0081425_139657	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	3000	Open in IMG/M
Ga0081425_141079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae	9634	Open in IMG/M
Ga0081425_142395	All Organisms → cellular organisms → Archaea	32809	Open in IMG/M
Ga0081425_143755	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	3790	Open in IMG/M
Ga0081425_144666	Not Available	2926	Open in IMG/M
Ga0081425_147964	Not Available	1064	Open in IMG/M
Ga0081425_148040	Not Available	1847	Open in IMG/M
Ga0081425_149145	Not Available	2298	Open in IMG/M
Ga0081425_155984	Not Available	1198	Open in IMG/M
Ga0081425_156126	All Organisms → cellular organisms → Bacteria	3759	Open in IMG/M
Ga0081425_156296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7430	Open in IMG/M
Ga0081425_161958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10143	Open in IMG/M
Ga0081425_162961	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	3188	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0081425_120395	Ga0081425_1203953	F052439	VLLSTVNIVTMVSPMVGARIPLDLHHQLLEAAAQLQVTPSEVIVAALRQYLERLQAPVNSPTTKEILDRLERLERRIEVLEAHPAAPPSDLEALPVPELRRLARRVIGPGGDRDSSTGKHLRRAELLAALRQALSGN*
Ga0081425_121746	Ga0081425_1217461	F068874	VFGRLRRVLRFYERVELPDVPAQPQSLAYGGRTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTARMKRRLGLPDREIVLFQTGKLYASIQVLNMKKYYLIRVQRDKLSYIIRRFPVVRWLRVDASAVRAGLSKAILAALLACAPLKKNRSVQRVEVAVRREEVVAHETLRLTTLLNDTIHLRNERLVIQYDTIRQKLRIEQVRPIVVVRDSVGRWNTVV
Ga0081425_123169	Ga0081425_1231695	F021443	MKCLLDDKKLTFTFRTSYVTCHNYDYNYFQTNGILSFAIIDLALKIIKQQQKRKFIILKKRKPIIHLLNYVDTLNFNFNSYKFDITFTLKNKHKTQLIYNLYLYRRIYYKDFDFYKNSLKVIECKNLCIIRLEDAYASRIQPKNLNLAIMLVHIFEKEEIDMIDIDGIIFYCVFLM*
Ga0081425_123169	Ga0081425_1231696	F021443	MKCLLDDNKLTFIFKSSYYVTCYNYGYNYYQVNGILSFAVMDLAFKIIKQQKRKSIILKKRKPIIHLFNYVDILNFNFNSYKFDITFSLKNKCKTRLIYNLYLYRNLYRRRYYEDFYKDSLKIIERENLCIIRLEDAYASRIQPKNLNLAIML
Ga0081425_124592	Ga0081425_1245922	F104114	MERLRLWLECSQDEKFTVAEKELKNAIVARCDEFAGVWFLSRSVEDIAPSALADIVIQTVEALLGLQWRLEWDYDADADDMVLGSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVPLIKEVK*
Ga0081425_125461	Ga0081425_1254612	F019254	MPSEKIQEALSHLQDDWPIRVLLSALAEGVAELAALLGRAEAQKLPPEFLTRIRAIEEEMHELSRLCQNQPLPRGKNATRKIDSLPLF*
Ga0081425_130494	Ga0081425_1304941	F080678	MFVRKVDAKTTPISEVYDDWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPWRGISAGKLMRKLQKLGVTWSFNRDVVRHGVLQAVGYKLLDIEEFEHMRVFGRKE
Ga0081425_130494	Ga0081425_1304942	F088087	MLKASDGSVWMPVTVSSAPCEICRRKSKSVVYECVEGKWAGVRVVACPEHAEQVIEQFIAGGEE*
Ga0081425_130494	Ga0081425_1304947	F092976	MMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWIDASWDAESDHEFLLVECRNGHLFRADEEFWLFDCDDHSDAGVYVPSETETEVSAHAG*
Ga0081425_131042	Ga0081425_13104223	F103256	MEYKKGQLDEILFLIKRGFSYGDIMSMPVYERRYFVQYIIELENSK*
Ga0081425_134151	Ga0081425_13415111	F086364	MEREKIIAALETAFAEISGAEYEDEPKTFAEFLESFKKFRDPDFPVYWIPWTIEEAVEELTGRKFGWHEDAFKDEWSYTGEFGFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVRAVEYFLRLVQQA*
Ga0081425_134151	Ga0081425_1341513	F092976	MMTVQEILHWKQELRRVLQEFLRKWKKCPKCGARWIDIAWDAESDHEWLIVECRSGHLFRADEEFWLFDYNGSGVYVPSEETETEVSAYASKGRKCVF*
Ga0081425_134151	Ga0081425_1341515	F088087	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAGKAIEQFIAGGDE*
Ga0081425_134151	Ga0081425_1341516	F080678	MFVRKVDAKTIPIAEVYDDWERIWMGEKEIRRFLTYTGLSAPPYNLRVGHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
Ga0081425_134151	Ga0081425_1341519	F100012	MDKEKVLQALKEAQAEYNIKDLDSFIKTAWEEGDVLQAQFVAETIERAVEILFERHFLWVHIVESEDCELWLPDGWYFFVAVHPETGQCLTFLNDPVYRWKSASFRARIRSAEDAVDAVMRLAELIEQNLKSRAVR*
Ga0081425_139657	Ga0081425_1396572	F004367	MGNQTNGNGRDNGDRWTEGLLTGAGASVSLVLDDRQRHAVNLALEVFAYLLAALPSETVLTVDVIRFLKWYSRGINNAKSE*
Ga0081425_139657	Ga0081425_1396573	F003460	MPRASRNERYMHDLQHVYESLYDVLAPRGLYPEAFLLLVVNLRRPGELRDVAIELVVRARAGGSPVWRAHDSLRVPGRMKLRSLADALCGLMLRATYDIEALVPLPGSDRERHQGGARA*
Ga0081425_139657	Ga0081425_1396575	F004367	MGNQTNGNGRVNGDRWTEGLLTGAGASVSLVLDDRQRHAVNLALEVFAYLLAALPSETVLTVDVIRFLKWYSRGINNAKSE*
Ga0081425_139657	Ga0081425_1396576	F076662	MPKASRNERYMHDLQHVYESLYDVLSPRGLYPEAFLLLVVNLRRPGELRDVALELVVRARAGGSPVWRAHDSLRVPGRMKLRSLA
Ga0081425_141079	Ga0081425_1410798	F033339	MGVQGGSTGDPQIQGRSPNQSLFQGGCIVFRSKLTNLDVGVVVATPSPRVRVLFDNRNHATQKVILYVGFPDKESAERVYSWLITHGYRHYDRATDTGILKPRKAERVSGMAWEIKIHRPTVELVKRFVVKDLAR*
Ga0081425_142395	Ga0081425_14239517	F014730	LKMSDAMLFKRELGTNCNLDVKMLDTLNDGFILIIEQELVNGDSLALITSFVTQHKLSLLLDSERYFISTKALSPSSQHWWDS*
Ga0081425_143755	Ga0081425_1437553	F043237	MLEKTAKYIAQLSAKGYKYAIIGQLSGYNRKLVKRLEYDGFVFYLCRLQTKKEVIAYCLERAQGTFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQRSFINDCLNAIEKASEVKYPSPKLYIAQVNKALRQLYSVLAYTYNDRERLKAIKKKVKHWVVEALKRHGVKPKDAMLDYSRYVLKFSDVLKKKRQSPSPRTAH*
Ga0081425_144666	Ga0081425_1446663	F084856	MFVLYFHEDIKPMESGDAMSDLSNLMIVTHLYTKEHAEALSQTLPEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWLESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPSNCNPVRYVKSETQTDRKSSKPSGRR
Ga0081425_147964	Ga0081425_1479641	F086364	MEREKIIAALETAFAEISGAEYEDEPTTFAQFLESFKKFRDPDFPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLRLV
Ga0081425_147964	Ga0081425_1479642	F069506	MQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSLEEYLEHYRKYWDEPDFPNDIPEIIMRAVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHCFINVAGTVIYYEDIIRLVTKLLNQIQSALADA*
Ga0081425_148040	Ga0081425_1480402	F043237	MELERTARYIAQLSSRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLSAKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLRVIERASSLKYPNHKLYTIKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKKAMEDYRRFVVKFSDVLKRKQRANSSTS*
Ga0081425_149145	Ga0081425_1491452	F070754	MIVRDFSFDIIDSTTNTYQPFDPRTDTLILAPLDRYKIRVKARYFVVIEPTQGALDNPDPNAFVTSFSTWTVGGEFSLNLFGQDFEQEGFAVGDGVFVFLHWSTGTPPLYAGYLCQIIGINGSAATFRINTVGTGSGVPDAQLPLRAVITMTNDRVELKSSFHFGNNSGPTSPLSALPFTSPHADAIRGYISLDPNDLPPPILYNLQKYASLEPVIDNLGGSAYPLSFRGRAFIIESTQFYAYRTNLDPQAQAPTSLYSLDGRIEVLLQAPVPVRDAALTFPCLLLHPNRKGRSLNFLNPGTLTIASGSYTLTPPSGFTPIRSVLAVTGRDSDHPRLDIPASLTLPNPVTGASGAVPTITNR
Ga0081425_155984	Ga0081425_1559842	F043237	MLEKTAKYIAQLSARGYKYAIIGQLSGYNRKLVKRLEYDGFVFYLCRLQTKKEVIAYCLERAQGTFKVYCLASKPLEFPNAPLKLWYDEKGQRLRLLAQRSFINDCLNAIEKASEVKYPSPKLYLAHVNKLLRQLYAILVHTYNDRERVRAIRRKVKHWVVEALKSQYGLKPKDAMADYGRYIVKFSDVLRKKVKKNLKP*
Ga0081425_156126	Ga0081425_1561264	F019254	MPSEKIREALFYLQDDWPIRVLLSTLAERVAELAALLGRAEAQKLSPEFLTRIRAIEEEMHALSRPCQNPPLPHRGNARRKVDNLPLF*
Ga0081425_156296	Ga0081425_1562962	F044249	MTKRDAILAFLAGSLTVVAKKYAMVLVALIVLGALANFLGWLHAVVSGEGCKAVKILQGTARLVFYIVFYLALLVALEQVAAYLIPPLLSVAILYEASLALKKAVQLNIIPASLVRQLTNVFRREPPEKAS*
Ga0081425_156296	Ga0081425_1562964	F038584	MTDTIKQIQKAAEELNAVLHATAATEEETKTLDAISKAAAHIRQQLREQMPNAGTRIKVGELRAARKLMQRYLQKTTVGTNIPREYIGESFYVTRQPVIEFIQDYLRTETLDVLAEITQVRLNPFTGAPAVVGEGGEKPTMGTTPQRVNSNYRKIAFTDRITDEALLSYPNIVDFLIWHGAYRIEVFLHNALIMAITAIASGATLPTGIPSPQIADLLIYMRAFHDQQAAIGPRGDWLANIAIVPFPYYWRLIFGGLKTTTGEYIQLDRQLQGLTLIASGTDQSNPTIVLNENELEVFYLGDITVNFGRVFDGASETNVRRLSMDLFYAPLPHPARPVLVADTESAINALA*
Ga0081425_156296	Ga0081425_1562967	F054062	MGNLRQLRWKDFCDGLDKDQPDEIQKEAEHIFFDHVFREVVLTFFQNVSELLLLYEAALSAPAMKPIADAKFNELFKQHPIPFYESFVPVLKNMGAEPEKATFLEICAYLNTYKS*
Ga0081425_161958	Ga0081425_1619586	F000353	MTQVQIGGTELKVRIEKALTEKGLKKLITNLEKELNGEHSFLPHDVEAQIRREIANAGVAVSQHGGWYRCIAAYLILPKLDDLLAVKSTSEEKNVAPIVQKLRNEALRESLGAFGLEVPARYARTSSGTGRTRVRIPREQKQQLVESFLDALPTFEALKDVLDTLPKNTNLMVKQIRSLVKRYLSIANRLQSVATHE*
Ga0081425_162961	Ga0081425_1629614	F043237	MDLEKTAKYIAQLSRHGYKYAVLGDLSNYNRELVKKIDLKGFVFYLCRLPSKKEVIAYCLQKTDKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLFTGQINRILRQLFEVLAYTYNDRERVRAIRRKVKHWVVEALKSQYGLKPKDAMTDYHRYVLKFSDVLRKKVKKNLKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006065: Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences