Sample 3300022545

Basic Information
IMG/M Taxon OID	3300022545 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127782 \| Ga0212125
Sample Name	SSW_combined assebmly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300022545 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111485 | Gp0127782 | Ga0212125

Sample Name

SSW_combined assebmly

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	252490709
Sequencing Scaffolds	29
Novel Protein Genes	32
Associated Families	15

Dataset Contents

Total Genome Size

252490709

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	13
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Pyrodictiaceae → Pyrodictium → unclassified Pyrodictium → Pyrodictium sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → unclassified Thermoprotei → Thermoprotei archaeon	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	4
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Pyrodictiaceae → Pyrodictium → unclassified Pyrodictium → Pyrodictium sp.

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → unclassified Thermoprotei → Thermoprotei archaeon

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Ecosystem Assignment (GOLD)

Name

Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Nevada, Gerlach, Sandy's Spring West
Coordinates	Lat. (^o)	40.653	Long. (^o)	-119.3749	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Nevada, Gerlach, Sandy's Spring West

Coordinates

Lat. (^o)

40.653

Long. (^o)

-119.3749

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F019254	Metagenome	231	Y
F056639	Metagenome / Metatranscriptome	137	N
F060592	Metagenome	132	Y
F063403	Metagenome / Metatranscriptome	129	N
F074155	Metagenome	120	Y
F080093	Metagenome / Metatranscriptome	115	N
F080678	Metagenome	115	N
F083525	Metagenome / Metatranscriptome	112	N
F084856	Metagenome / Metatranscriptome	112	N
F088087	Metagenome	109	N
F089858	Metagenome	108	Y
F091324	Metagenome / Metatranscriptome	107	Y
F103293	Metagenome	101	Y
F104050	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0212125_1000532	Not Available	23967	Open in IMG/M
Ga0212125_1003105	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	8246	Open in IMG/M
Ga0212125_1005750	Not Available	5372	Open in IMG/M
Ga0212125_1005773	Not Available	5351	Open in IMG/M
Ga0212125_1008314	All Organisms → Viruses → Predicted Viral	4099	Open in IMG/M
Ga0212125_1009022	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Pyrodictiaceae → Pyrodictium → unclassified Pyrodictium → Pyrodictium sp.	3855	Open in IMG/M
Ga0212125_1010106	Not Available	3538	Open in IMG/M
Ga0212125_1012269	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → unclassified Thermoprotei → Thermoprotei archaeon	3063	Open in IMG/M
Ga0212125_1014457	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	2687	Open in IMG/M
Ga0212125_1016955	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei	2366	Open in IMG/M
Ga0212125_1017005	Not Available	2359	Open in IMG/M
Ga0212125_1017423	Not Available	2313	Open in IMG/M
Ga0212125_1019159	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2148	Open in IMG/M
Ga0212125_1019428	Not Available	2121	Open in IMG/M
Ga0212125_1023663	Not Available	1817	Open in IMG/M
Ga0212125_1043721	Not Available	1079	Open in IMG/M
Ga0212125_1045147	All Organisms → Viruses → Predicted Viral	1049	Open in IMG/M
Ga0212125_1045317	Not Available	1046	Open in IMG/M
Ga0212125_1061337	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	805	Open in IMG/M
Ga0212125_1065617	Not Available	758	Open in IMG/M
Ga0212125_1066390	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	750	Open in IMG/M
Ga0212125_1068953	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
Ga0212125_1073654	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	682	Open in IMG/M
Ga0212125_1077762	Not Available	649	Open in IMG/M
Ga0212125_1078582	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
Ga0212125_1085048	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	597	Open in IMG/M
Ga0212125_1093251	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	546	Open in IMG/M
Ga0212125_1097629	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	523	Open in IMG/M
Ga0212125_1101804	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0212125_1000532	Ga0212125_100053215	F084856	VLYFHDGIIRPAERGDVMPNVSDLIIVTHIYSKSHLEALSETLPEWRKLAPSARILVGYYANRFQASEFGTLLAENVELVPVHNSSYGAAYDTLLERTIGQPILILAPYAIPKEWFIGAHGSLFSWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGTILVRARPGAYLLYNALAAGYPVMTLARNCNPVRYVKRADKKAEKW
Ga0212125_1000532	Ga0212125_10005323	F063403	VLVDSNPEKEDLNLEEAMFLMEQNISRAEALNALRVAIRSVRRSPIKLPFGDDERFFIEIRIPRFAERLDLQMAAQLMLAGLGGSERLVAALPSLITSFRLPAETESGEIMQAVYNAEPLPDIPVLNLTPADLFSDSSDFNATPMLMTMIITALMELSGRTQTVAAGVNELLELFPGTNSNSANILEQGSSRVSGNQ
Ga0212125_1003105	Ga0212125_10031052	F013155	MELYQAVVVAIALANLAVTAWLLKLLLPIWRGLREVVFNLDNWDFDKLAQKFLSGEKPMAESVIVKTSENKEGYREISVTRVYKKPLDAKEVWEGIVRQMAEKMQ
Ga0212125_1005750	Ga0212125_10057507	F063403	MEGNINRTEALRELRAAIRSVRRTPIKIPFGNSDKFFIEIRIPKFSERLDIQMAAELFLGGFDSSERLVKSLPPLITSFRLPAEDEEGNLMQAIYNAEPLPDLPVLQLEPSDLFSDESAFNATPVLMTLIITTLLTLSGRTQNVAAGMNELLELFPGTNQNATDLLDKGSSRVSGSE
Ga0212125_1005773	Ga0212125_10057738	F060592	MSPHINFAAGPLFHGDVMPREELDPRLKELLDKDPVAFFHALADLYVQGLDPKAMGIIPSNPVTKKVKSPDRWAKQQIENAVAAASDWLDGVKNPARNPIEAALDKKDKWIDRLTAAIKDDKWAKNLKKVSPGEIIEVAEKVGTSAYATGITARESKIKKRVAELQPLVQAVSDAIQAMPDKTDADREKRLLTARKLMIEVGKKRAGA
Ga0212125_1008314	Ga0212125_10083144	F104050	VSEKKCIIRLRKHCVVFESIVDDEKQKYGTKDYVITYCSMCIKTFYAKAKHKLVNKFSVVNTL
Ga0212125_1009022	Ga0212125_10090222	F104050	VERRRSCIIRLRKYCVVYEELVNEEKSKYGTREYCITYCSLCIKTYYAKAKMKLVNKFSVVNTL
Ga0212125_1010106	Ga0212125_10101066	F088087	MQSAMLRASDGSVWRAIGVSQSGCEICRRKAAAIYECVEGKWAGVRVVACPEHAQDAIEKFIAGGEE
Ga0212125_1012269	Ga0212125_10122695	F104050	MIGKKCIIRLRKHCVVYDSLISDEQQKYGTKDYVITYCSMCIKAFYAKAKIKLVNKYSVVNTL
Ga0212125_1014457	Ga0212125_10144575	F089858	KLTKEYVEREIRRKLSIPELEEEGLMEVIVSEVGVDGLLNIPVKQGELWVEELKDGRFALNLDDPDEPKITCAEVQLVHEGLEEETIKVRDVKYVILGDIPDMGRARLIRIRKGVREVEEAFNTND
Ga0212125_1016955	Ga0212125_10169554	F104050	MSEVKKCIIRLRSYCVVYDSLVNEEKQKYGRKEYVVTYCGICIKSYYAKAKMRLINKFSVVNTL
Ga0212125_1017005	Ga0212125_10170051	F084856	MSCTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGCYQKKFQPSDFQFLETYDRVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQPSKAHKK
Ga0212125_1017423	Ga0212125_10174234	F080678	MFGRVVNAQTTPISQVYDSWQSIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPNLRGMTARRFVQKLRRLGVGWSWNGDAVRRSVLLAVGYRLLEIEEFEHNRIFGRKEEVSVNV
Ga0212125_1017423	Ga0212125_10174235	F088087	MWKASDGSVWKEVGASTSSCEICRRKDSARIYECIQGKWAGVRVVACPEHKEQAIEKFIYGGEE
Ga0212125_1019159	Ga0212125_10191592	F091324	MSIHLHTTITKKANDILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKINEQTKLREALDLTSISRRNLDSLLEIALGNKTIEDFVKEQKADAKNTIETLKSSISWKPPSNFKEFLMVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPVIVAFHVATILEGIGVYFDMRVMGEDIAVKMVRPEIYPLRRKEFGEFF
Ga0212125_1019428	Ga0212125_10194282	F080678	MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVKKLRRLGVTWSWNDDSVRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV
Ga0212125_1023663	Ga0212125_10236633	F104050	VSEARKCIIRLRKQCVVYDNLVADEQQKYGSKEYVVTYCGMCIKSYYAKAKMRLINKYSVVNTL
Ga0212125_1043721	Ga0212125_10437212	F060592	MPREELDPRLKELLDKDPAAFFHALAEFYMQGLDPKAMGIIPSNPVTKKVKSPDRWAKQQIENAVAAASDWLDGVKNPARNPIEAALDKKDKWIDRLTAAIKDDKWAKNLKKVSPAEIVEVAEKVGTTAYATGISARESKIKKRVSELQPLVQAVSDTIQAMPDKTDADREKRLLMARKLMLEVGKKRAGA
Ga0212125_1045147	Ga0212125_10451472	F104050	VSEVKKCIIRLRKHCVVYDGLISDERQKYGSKDYVITYCSMCIKTFYAKAKHKLVNKFSVVNTL
Ga0212125_1045317	Ga0212125_10453173	F080678	MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAFTGLSAPPYNLRVENFLQFPFLRGMTARRFVQKLRRLGVTWNNDVMRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV
Ga0212125_1061337	Ga0212125_10613371	F074155	PEYESADGGEGSRFEGHWQPCNTLAFLKGLGDPALANSRGKALMRVLAKSPNGAADLGLRARQVKTLIEWEDPPQLRKVLSRISLLLTQMGQRENWLLANYAGNLARKIVAFKLLTKQPISHKLGDAIIAHTIEKFGLKTAASDLKVETEDLQLIRQLENMAQKPKRPKPAYQASSSINS
Ga0212125_1065617	Ga0212125_10656172	F063403	VLTLRLEFLKQGGDFKAMEGNINRTEALRELRAAIRSVRRTPIKIPFGNSDKFFIEIRIPKFSERLDIQMAAELFLGGFDSSERLVKSLPPLITSFRLPAEDEEGNLMQAVYNAEPLPDLPVLQLEPSDLFSDESAFNATPVLMTLIITTLLTLSGRTQNVAAGMNELLELFPGTNQNATDLLDKGSSRVSGSE
Ga0212125_1066390	Ga0212125_10663901	F089858	MEWVEYLARLRFHVDGFYAEKLTREYVEREVRRKLSIPEFEESGLMEIIVSETGVDGLLNIPVKHGELWVKELEDERFAINLDDPDDPKITCAEVQVMHEDLEEETIKAKGVKYVIIGDIQDMGRARFVRIREGVREVEEASNEETHYQDS
Ga0212125_1068953	Ga0212125_10689531	F056639	VCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLGASLLAVSVPAPALTAWMHMPLWWWGFVPPLGIVSGLAVEFHPLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE
Ga0212125_1073654	Ga0212125_10736542	F103293	MAVAAEPLNLEAVEWLTPPYEIFEFQPCQPAVFHVVGYKIGKIRIAPRWPGAPPQKLVLAIRLYVTPESKPMFPHYWDITPARLVHQLAAMLVRGIPPGMRLRIHRDIPGPKAHFSVEWV
Ga0212125_1077762	Ga0212125_10777621	F084856	DLAIVTHIYTKPHAEALMETLPEWVKLAPSAQIFVSYYLNRFQPSDFHSLMVYDRVDFIPVANSSYGAAYDTLLERTVDKPVLILAPYAIPKEWFIGANGSLFKWFESYAVIGRYKQPRILVADAILMPLVAPVIVELGRLQMDCIAIRNDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGFPVLTLTRNCNPVRYVKKDDGRTEKAGRR
Ga0212125_1078582	Ga0212125_10785822	F083525	LKGDVVTILPTVQGTTPYDRLYWTGYALGSAPVNVNMRVLARAVDHNGVPLGSGWRPIGQATIQTPPLRWFRVEIPEGHWDEYRIEVRSATPRLVYSRVIASQGYWKE
Ga0212125_1085048	Ga0212125_10850481	F089858	MEWVEYLVRLRFHVDGFYPERLTKEYVEREIRRKLSIPELEESGLMEIIISKVGVDGLLNIPVKRGELWVEELDDGRFAINLDDPDDPKITCVEVQVVHEDLEEETIKAKDVKYVIIGDITDMGKAR
Ga0212125_1092941	Ga0212125_10929411	F080093	LREQLYHPLVQSVLHILRELVASGGVRLVGDAPDEERALFTQLTATRGFAQALRHLATAHVAGAAVVEIVWGDDYMPHALRPAPPEMVQFGIGEDGEIVAVRLTTSAGVQELPLTHAIIVDAYPAWHIYGVRELPIHALSKYLQAYDRVLRSMDLYLQRHAVPTAVAKTPASYTETETQQLY
Ga0212125_1093251	Ga0212125_10932512	F089858	IRMEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSKKGFDGLLNIPVKRGELWVEELDDGRFTINLDDPDDPKITCVEVQVVREDLEEETIKAKDVKYVILGDIPDMGRARFVRIREGVREVEEE
Ga0212125_1097629	Ga0212125_10976292	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALVGRASAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVE
Ga0212125_1101804	Ga0212125_11018041	F080678	VMFARKIDAKTTPIEAVYNDWERVWLSAETIKRFLAISGLTAPPYNLRVEDFLKFPHLRGMAARRFVRKLRQFGVTWSWNDGVVRRGVLQAVGYKLREIEEFEHNCIFGRKEVSVNV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022545: SSW_combined assebmly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences