NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025345

3300025345: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025345 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0067861 | Gp0093345 | Ga0209669
Sample NameThermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size69503882
Sequencing Scaffolds25
Novel Protein Genes43
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. WP301
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum2
Not Available11
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.6
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomehot springspring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F021443Metagenome / Metatranscriptome219Y
F038745Metagenome / Metatranscriptome165Y
F051572Metagenome / Metatranscriptome144N
F063403Metagenome / Metatranscriptome129N
F069506Metagenome124N
F075483Metagenome / Metatranscriptome119Y
F080678Metagenome115N
F084856Metagenome / Metatranscriptome112N
F086364Metagenome111N
F088087Metagenome109N
F092976Metagenome106Y
F100012Metagenome103N
F104114Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0209669_100028All Organisms → cellular organisms → Bacteria91010Open in IMG/M
Ga0209669_100405All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. WP3025251Open in IMG/M
Ga0209669_101585All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae9069Open in IMG/M
Ga0209669_101891All Organisms → cellular organisms → Bacteria7691Open in IMG/M
Ga0209669_101945All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum7491Open in IMG/M
Ga0209669_102452Not Available5871Open in IMG/M
Ga0209669_102732All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.5204Open in IMG/M
Ga0209669_104013All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon3258Open in IMG/M
Ga0209669_104965All Organisms → cellular organisms → Bacteria2419Open in IMG/M
Ga0209669_105223All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum2258Open in IMG/M
Ga0209669_105467All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.2118Open in IMG/M
Ga0209669_106724Not Available1582Open in IMG/M
Ga0209669_108333All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1137Open in IMG/M
Ga0209669_108383All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1129Open in IMG/M
Ga0209669_108856Not Available1045Open in IMG/M
Ga0209669_110223All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.858Open in IMG/M
Ga0209669_110548Not Available821Open in IMG/M
Ga0209669_110865Not Available787Open in IMG/M
Ga0209669_111371All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.740Open in IMG/M
Ga0209669_111616Not Available718Open in IMG/M
Ga0209669_112466Not Available652Open in IMG/M
Ga0209669_112524Not Available648Open in IMG/M
Ga0209669_112678Not Available637Open in IMG/M
Ga0209669_114597Not Available520Open in IMG/M
Ga0209669_114824Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0209669_100028Ga0209669_10002814F063403MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSTDLLEQGSSGMPGDQ
Ga0209669_100028Ga0209669_10002826F084856MERGDAMFDLSNLMIVTHLYTKEHAEALSLTLSEWRKSAPSSQIIVGYYQSRFQPSDFSNLMQDDAVQFVPVSNSSYGAAYNTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPIIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSSNCNPVRYVKPETQTDRKSSKPYGRR
Ga0209669_100028Ga0209669_10002857F092976MTVQEILHWKQELRRVMQEFLQVWQKCPKCGAKWADIAWDAESDHESLLVECRSGHLFRVDEQFWLFDYDDTGVYAPSETAMAEVSAHAG
Ga0209669_100028Ga0209669_10002862F080678MFAKKVDAKTTPIAEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0209669_100028Ga0209669_10002865F100012MDREKVLQALKEAQAEYDIKDLDRFVRTAWEEGDALQAQFVAEMIERAVEILFERHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVMRLVELIEQNLKSRAVE
Ga0209669_100028Ga0209669_10002866F069506MELEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDEPDFPNDIPELIMRTVEKIVGSPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA
Ga0209669_100028Ga0209669_10002867F086364MEREEIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRKFGWHEDPLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQRA
Ga0209669_100028Ga0209669_10002871F104114MERLRLWLSLTQDEKFAAAERELKNAILDIHEDFEEEWSLSRSVEDFAPDGLAEIVIQTVEALLGLQWRLEWDYGADADDMVLSSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK
Ga0209669_100405Ga0209669_10040523F038745MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELGLPAPALKALAEELGPEPRWHDALAASFFRLYLGVYRRRRVDGRDVALALCLWAQKKRLEDPWNPLWRAAELKPDKLYTEEEARKALAINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV
Ga0209669_100405Ga0209669_10040524F051572MTSRTHSGPFAEVRTFADVVLEGGCKKSLQFLNAHFDLCVLTVLIKTAPAGPMVKLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA
Ga0209669_101585Ga0209669_1015857F013155VAVIAIALANLAVTVWLLRLLIPIWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQENFVRQMAERLQ
Ga0209669_101585Ga0209669_1015858F075483MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPAYASFWIRSVDVLVVETPQFEASKVVIKVRWLFSEEIHMTYSFRVYDVAMHPLRRHHYVRWKAWMSGDDRYRCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK
Ga0209669_101891Ga0209669_10189110F088087MKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0209669_101891Ga0209669_10189114F092976MTVQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAESDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEEVSVHAG
Ga0209669_101891Ga0209669_1018915F086364MEREKIIAALETAFAEISGAEYEDEPVTFAEFLESFAKFRDPDFPVYWIPYTIEEAVESLTDRKFGWHEDVLKDEWSYTGEFGFVCVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQQA
Ga0209669_101891Ga0209669_1018916F069506MQLAQVPYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALTAA
Ga0209669_101891Ga0209669_1018917F100012MDKEKVLQALREAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVA
Ga0209669_101891Ga0209669_1018919F080678MFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISARKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0209669_101945Ga0209669_1019453F075483MIELLAVQTITTLALAFFVIKLRRELYPMIAGAGPTHASFWIRSVDVLVVEAPQFEVSKTVIRVRWLLSEELFLIHSLRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK
Ga0209669_101945Ga0209669_1019454F013155MELYQVAVIAIALANLAVTVWLLRLLIPVWQTLRKVVFALDHYDFDKLARQFLGNEKPLAESVVVKTSQKEREGYREISIIRTYKKPLDTKEIQENFVRQMAERLQ
Ga0209669_102452Ga0209669_1024528F104114CIMERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG
Ga0209669_102732Ga0209669_1027321F051572MSRGRAHGGPFAEVQKIADVVLKGGCKKSVQFLDAHLELCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGETLAQLRRELGDKAPAEA
Ga0209669_104013Ga0209669_1040131F021443EFACPYPPYVTCYNDNYYQINEILSFAVIDLVFKIVNQQKRKSIILKKRKPIIHLLNYIDTLNFNSNSNKFEITFPLENEYEMLLIYNLFLYRSSHQERYYNDLHKNNLKVIEHKNSCIIRLKYDGSDIIQPRNLNLATMLMRILKKEEIDVDLNGMIFYCIFLM
Ga0209669_104965Ga0209669_1049652F086364MEREKIIAALETAFAEISGAEYEDEPITFAEFLESFAKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRISRD
Ga0209669_105223Ga0209669_1052234F038745MDKAVVVVCGELMQISLAFSAYYPLCSGGQPCAFAEAVERLIRRAASARGAEELLEAINGRVRLEGLGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLAFALCLWAQKKRREDPRDPLWRAAELEPDRLYTEEEARKALEINEAFFRRLWRRALVFHRGEKAYGFQLILAALSLMAAPPRSA
Ga0209669_105467Ga0209669_1054673F051572VWAFADVVLKGGCKKSPQFLDAHLELCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGQDRERIRNALLKKAGETLAQLRRELGDKAPAEALLAKLVELFLKELEA
Ga0209669_105467Ga0209669_1054674F038745MDKAVVVVCGELMQISLAFSAYYPLCLGGPPCAYAEAVERLIRRAASARGAEELLEAINGRVRLEELGLSAPALEDLAEELGPEPRWLDALAASFFRLYLGLGRRRRVDGRDLALALCLWAQKKRQEDPRNPLWRAAELEPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLI
Ga0209669_106724Ga0209669_1067241F021443MKCLFNSGKLTFRFGYPLITYVTCYNDNYYQSNGILSFAAIDLAFKIIKQQERKSIILKERKPIIHLLNYIDILNFNFNRYKFGITLPLKNKYKTPLIYNLYSYRNLYERRYYKDFYKDRLKVIERENLCIIELDYDYASKIQPKNLNLATMLMYILDKEEIDMIDGNGIIFYCV
Ga0209669_106724Ga0209669_1067242F021443MKCLLNDERLTLVFKHSYITCFNYDYGYYQSNEILSFAVIDLAFKIISQQKRKKSIILKKRKPIIHLLNYIDILNFGSNSNRFDVAFYLKNKYKVPLIRNLYLYRSSHRKRYYEGFYKDRLEVIERENLCIIKLEDDYVNIIQPKNLNLVAMLMHILTKEEIDMLEGDGTIFYCIFLI
Ga0209669_108333Ga0209669_1083332F013155MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQEGFVRQMAERLQ
Ga0209669_108333Ga0209669_1083333F075483MIELLAVQAITTAALAAVVIKLRRELWPAVAVAGPQNLGFWIRSVDVMALSGPQFDVDKIVVRVRWTLTEELFLIHKLRIYDVAIHPYRRHHYVRWKAWMQGDDRYECEVEKPRGLARLYNKAIDVFCKEKEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT
Ga0209669_108383Ga0209669_1083832F013155MELYQVVVIAIALANLAVTVWLLRLLIPLWRYLQKVVFVVDEYDFNRLISQFLNGEKPMSETIHIKTTENKEEGYKEIIITRAYKRPLDPREIQENFVRQMAERLQ
Ga0209669_108856Ga0209669_1088562F021443MKYMLNNKKLTFEFGHPYPPYVTCNNDSYYQINEILSFAVIDLAFKIISQQERKSIVLKKRKSIIHLLNYIDILNFNSNKFEITFPLENKYKALLMYNLFLYRSSHQERYYNDLHKNNLKVIENKNSCIIELKYDYSSRIQPKNVNLTTMLMRILAKKEIDTDLNGIIFYCVFLM
Ga0209669_110223Ga0209669_1102232F075483MIELLVVQTITNLALAAVVIKLRRELWPMIAGADPPGSGGVGFWIRSIDVLLVEMPLLRVAKSVTRVRWLFSEELHLTYRLRVYDVAMRPSSRVFYKEWKAWMQGDDRYKCEVEKPRGLARLYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKQSK
Ga0209669_110548Ga0209669_1105481F021443MKCLLNNGKLSFRFRDPYRIDYVTCYNYDYSYQINGILSFAIMDLVFKIIKQQERKSIILRKRKPIIHLLNYIDMLNFNSNSNKLAITFPLENKYKAQLIFNLYLHRSSYQRRYFKDLYKNNLKVIERENSCIIELEDDYASRIQPKNLNLTTMLMHILEKKEIDLIDVNGLIFYCVFLM
Ga0209669_110865Ga0209669_1108651F038745MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELSLPPPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKRREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV
Ga0209669_111371Ga0209669_1113712F075483MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPVHAGFWIRSIDVMVLAAPQLEVAKTVIKIRRLLEEELFLKYSLKFYDVAMHPTSQHHYRMWKAWMQGDDRYKCEVEKPRGLSRLYNKAVEVFCREKKEEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT
Ga0209669_111616Ga0209669_1116161F021443MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRRRYYEDLYKNNLKVIERENLCIIELDDDYPNRIQPKNVNLVTMLTHILEKKEIDLIDVNGLIFYCVFL
Ga0209669_112466Ga0209669_1124661F021443NEILSFAVMDLVLKIINQQKRKSIILKKRKPIIHLLNYIDILNFNFNSNKFVIAFSLENEYKRSLIFNLCLYRRRYKDFYKDNLKVIELKNLCIIRFERDYATRIQPKNSNLATMLMYILDKEEIDMIDANGIIFYCIFLM
Ga0209669_112524Ga0209669_1125242F021443YNDSYYQINEILSFAIIDLVFKIVNQQKRKSIVLKKRKPIIHLLNYIDILNFNFNSNKFEITFPLENEYEMLLIFNLFLYRSSHQERYYNDLHKNNLEVIEHKNSCIIRLKYDGSDIIQPRNLNLATMLMRILKKEEIDVDLNGMIFYCIFLM
Ga0209669_112678Ga0209669_1126781F021443MKCMLNNEKLTFKFAHPYPPYVTCYNYDYSYYQINGILSFAVIDLVFKIVNQQERKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFPLENEYEPLLIYNLYLHRGLHRERYYKDLHKNNLKVIEHKNLCIIKLEYDCSTRIQPKNVNLATMLIHILEQKEIDTDLNG
Ga0209669_114597Ga0209669_1145971F021443MKYLLDDERLTFRFGPSYVTCYNYDYSYQINGILSFAIIDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDTLNFNSNSSKFNITFRLENKYKTPLIYNLYLHRSSHRRSYYASFYKDSLSVIERENLCIIKLEDDYPSRIQPKNVNL
Ga0209669_114824Ga0209669_1148241F021443YVTCYNDNCYQINEILSFVIMDLVFKIINQQKRKSIILKKRKSIIHLLNYIDVLNFNLNSNKFNITFPLENEYELRLIFNLYLYRSSHRERYYKNLCKNNLKIIEHENSCIIRPESDSSTRIQPKNVNLTTMLMRILKKEEIDIDLNGIIFYCIFLM

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