NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FeGlu_10137760

Scaffold FeGlu_10137760


Overview

Basic Information
Taxon OID3300002988 Open in IMG/M
Scaffold IDFeGlu_10137760 Open in IMG/M
Source Dataset NameFe-reducing enrichment culture from wetland sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3308
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Source Dataset Sampling Location
Location NameDorn Creek (Dane County, WI)
CoordinatesLat. (o)43.135131Long. (o)-89.441777Alt. (m)Depth (m)0 to .3048
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005815Metagenome / Metatranscriptome389Y
F082105Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
FeGlu_101377601F005815AGGMTMKVTRLTTYWTLDEAATVIDFLDTLRDALWDTYGEQITTMHREAYDDHIRDTNQRELEFDDDIPF*
FeGlu_101377605F082105N/AMAALIWRDPPRCTGQPNVTVQRAVASTIMRIDSVGSGRANEKK*

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