NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FeGlu_10291972

Scaffold FeGlu_10291972


Overview

Basic Information
Taxon OID3300002988 Open in IMG/M
Scaffold IDFeGlu_10291972 Open in IMG/M
Source Dataset NameFe-reducing enrichment culture from wetland sample 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)734
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From Dorn Creek, Dane County, Wisconsin, Usa, Enriched For Fe-Cycling Cultures

Source Dataset Sampling Location
Location NameDorn Creek (Dane County, WI)
CoordinatesLat. (o)43.135131Long. (o)-89.441777Alt. (m)Depth (m)0 to .3048
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040357Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
FeGlu_102919721F040357N/AWTIDWFSSAVMFPGWAEYGDEPFLWRGPATYDPLIVYQPRTWLLREGWRKAGAISCQEVPAKKR*
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Institute for Fundamental Biomedical Research
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