NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0052246_1004517

Scaffold Ga0052246_1004517


Overview

Basic Information
Taxon OID3300003141 Open in IMG/M
Scaffold IDGa0052246_1004517 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from deep subseafloor of Shimokita Peninsula, Japan - 107 mbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJapan Agency for Marine-Earth Science and Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)832
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Source Dataset Sampling Location
Location NameShimokita Peninsula, Japan, in Northwestern Pacific
CoordinatesLat. (o)41.1773Long. (o)142.2013Alt. (m)Depth (m)1180.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F098316Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0052246_10045172F098316N/ALLLRLSPLQNSYRLRPVLADYRNVAGVERVEGALRFVRKDRYPTEKTMAAVTWETSKEYMYKVKVQSVLRIGESITERFVNIMSDVPMTPAMIETEVKERWGEWEKYTAEEITGLQVWSAVRKVME*

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