Scaffold JGI26339J46600_10000124

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI26339J46600_10000124

Scaffold JGI26339J46600_10000124

Overview

Basic Information
Taxon OID	3300003218 Open in IMG/M
Scaffold ID	JGI26339J46600_10000124 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25880
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (68.18%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F073398	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26339J46600_1000012410	F073398	GGAGG	MYLSRLTFATLPGHTRQVEEKLRRLRDMIAQAGGEQVRVLRSHFASLGAPDLVLEQEAPDLAALEKGIGTVTGSADFQALSLEISELLARGPKREVYQIL*

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