Scaffold P12013IDBA_1008536

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold P12013IDBA_1008536

Scaffold P12013IDBA_1008536

Overview

Basic Information
Taxon OID	3300003312 Open in IMG/M
Scaffold ID	P12013IDBA_1008536 Open in IMG/M
Source Dataset Name	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Campinas
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5185
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil → Ore Pile And Mine Drainage Contaminated Soil Microbial Communities From Mina Do Sossego, Brazil, In A Copper Mine

Source Dataset Sampling Location
Location Name	Mina do Sossego, Brazil
Coordinates	Lat. (^o)	-6.426389	Long. (^o)	-50.051389	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053534	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
P12013IDBA_10085362	F053534	GAGG	LNETLLWLLYLLSAGAAFLAVQRGGSRLVPAILAGTFVTIAGWALLYALAGEDERPDFWQVDLSLNASFAMVFAAAGAAIAFAIKSRQPD*

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