Scaffold rootH1_10054861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold rootH1_10054861

Scaffold rootH1_10054861

Overview

Basic Information
Taxon OID	3300003316 Open in IMG/M
Scaffold ID	rootH1_10054861 Open in IMG/M
Source Dataset Name	Sugarcane root Sample L1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1102
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil → Sugarcane Root And Bulk Soil Microbial Communities From Ayr, Burdekin, Queensland Australia

Source Dataset Sampling Location
Location Name	Ayr, Queensland Australia
Coordinates	Lat. (^o)	-19.733298	Long. (^o)	147.17873	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050419	Metagenome / Metatranscriptome	145	Y
F070201	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
rootH1_100548612	F050419	GGAG	MTNASRPTFLRNFGRGATSPRRPPDLADMGTAFALDEALESGHIDSIVPGDPSPPPVRAAVPVAPWRLWLGRKLGA*
rootH1_100548613	F070201	GGAG	MRTTQLQSLTWGTVTAAIGCAVWLSSSDQAALFCSVGYRATSQAMGFDIPAEPTRAGKAAQAPGSSAARQPEAG*

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