NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26465J51735_1002756

Scaffold JGI26465J51735_1002756


Overview

Basic Information
Taxon OID3300003598 Open in IMG/M
Scaffold IDJGI26465J51735_1002756 Open in IMG/M
Source Dataset NameThermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5268
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080678Metagenome115N
F088087Metagenome109N
F092976Metagenome106Y
F100012Metagenome103N

Sequences

Protein IDFamilyRBSSequence
JGI26465J51735_100275610F088087GAGGMKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE*
JGI26465J51735_100275611F080678GGAGGMFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISARKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
JGI26465J51735_100275613F100012AGGAGGMDKEKVLQALREAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVA*
JGI26465J51735_10027567F092976GGAGGMTVQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAESDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEEVSVHAG*
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