NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SLW30_100485

Scaffold SLW30_100485


Overview

Basic Information
Taxon OID3300003650 Open in IMG/M
Scaffold IDSLW30_100485 Open in IMG/M
Source Dataset NameSubglacial freshwater microbial communities from Lake Whillans, Antarctica - 3.0 micron filter
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2805
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Subglacial Freshwater → Subglacial Freshwater Microbial Communities From Lake Whillans, Antarctica

Source Dataset Sampling Location
Location NameWest Antarctica
CoordinatesLat. (o)-84.24Long. (o)-153.694Alt. (m)Depth (m)800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013888Metagenome / Metatranscriptome267Y
F038675Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
SLW30_1004852F038675N/AMKLYQSKDWLYRRYVVQKKTVTEIGKECEVSAMTIQRYLDKMGLIKKR*
SLW30_1004855F013888N/AVIVGVLPASGKASRIGGIPKFCLPISDERSLIQWHVEQMLAVCDEVRISTRQEWVPLVQNMDMNVKIIVKGPSTMSDAIKFMIGDYDDTVLIGMPDIYILNSSANIYKEMFKENADLVLGAWECTDDLRGLVGQIEILDNRVVSSKDKDKDCDYRYMWGTMLFRKNMIRYINPILDHPGKQIQEWIDMGLSIRAVHQGGKYMDIGTLRGLKQLYKEME*
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