NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0040873_103006

Scaffold Ga0040873_103006


Overview

Basic Information
Taxon OID3300003723 Open in IMG/M
Scaffold IDGa0040873_103006 Open in IMG/M
Source Dataset NameHypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)998
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053392Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0040873_1030062F053392AGGMSVPSYVTLTGPQTTVMPASFNIAASAAAGSVIQGSILAFGPQSPAVAAPQVPITEVWSIVDIYIIGSVTPDALLSVYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPASTWFTTVTLMAANGSSAQTYTVYFSVIRAPYLPSTSSK*
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