Scaffold Ga0062441_1038137

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062441_1038137

Scaffold Ga0062441_1038137

Overview

Basic Information
Taxon OID	3300003889 Open in IMG/M
Scaffold ID	Ga0062441_1038137 Open in IMG/M
Source Dataset Name	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humin and Glucose under anaerobic conditions - HM Sample 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1161
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture → Freshwater Pond Sediment Microbial Communities From Middleton Wi, Enriched By Humin And/Or Glucose Under Anaerobic Conditions

Source Dataset Sampling Location
Location Name	Middleton, WI
Coordinates	Lat. (^o)	43.0603	Long. (^o)	-89.5717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064239	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062441_10381372	F064239	GAGG	VCKGTPPNERLGLRVPYETIKETVADYFDIAHAVDPDLAEYRNDLLEIFPRRSERSRPRGALSAARFIQQHQRMLMDKVSAWIGKSDRRVVGRFLRQLQALCTYEHLMVPEAQRNEKLVDLTIVATWHVLDGIHRLSDRHPSRR*

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