NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063241_1003611

Scaffold Ga0063241_1003611


Overview

Basic Information
Taxon OID3300003894 Open in IMG/M
Scaffold IDGa0063241_1003611 Open in IMG/M
Source Dataset NameMarine microbial communities from the northern Gulf of Mexico hypoxic zone - Cultivation independent assessment
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13514
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Microbial Communities From The Northern Gulf Of Mexico Hypoxic Zone

Source Dataset Sampling Location
Location Namenorthern Gulf of Mexico, LA
CoordinatesLat. (o)28.7167Long. (o)-90.8333Alt. (m)Depth (m)16
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F039114Metagenome / Metatranscriptome164Y
F060433Metagenome133Y
F081741Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0063241_100361110F081741N/AMFDPLLVVVVATVSGAILNTIRGYLGSNTGVYDIKKFFGAVIVSGFAGVAIAQTISLTGLDILSIALVGLTAGFSIDYAVSKAKKVV*
Ga0063241_100361111F060433N/AMEMFTSLFEPLMIAVVLGIGGTLYGFFKKMSNTQSDLCETVKQLRRTIIILAKAVDRQSNRLHPDETLDSDLNDLVKEMLRDDK*
Ga0063241_100361114F039114GAGMATKLDLNSGGTDMGKKIVDIHQKNEYTAVNNYKEGLCFGCFGSNVVGALVADICGDCAGKKGREPLLVSIKPVYYGMCHFCGVYKFNMEQINCRLCQKCHRRTSDHMKAYNKAGGMHGADPFWKSIRRKHGKDWKHIMTNGTKSYRQ*
Ga0063241_10036115F016619N/AMAITIAQNADHKSLTGKTLSIQSELTSKLKTTIVDVTYGGSDNYATNGNTVDLSLGGRISTVIGAEILHCDKGLLLQYAPASGGAAATGKIKAYGHTPTSSTATVVALEELDDADTAVNSMTIRIRVIGF*
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Institute for Fundamental Biomedical Research
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