NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062593_100035798

Scaffold Ga0062593_100035798


Overview

Basic Information
Taxon OID3300004114 Open in IMG/M
Scaffold IDGa0062593_100035798 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2902
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameWisconsin, United States
CoordinatesLat. (o)43.2958Long. (o)-89.3799Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049308Metagenome147Y
F066982Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0062593_1000357983F049308GAGMQADQKECKQCGWDISHNGPPSTDPGDNKARVGVALGLIVAYGVMWFLVQGAPVSARADEAPRPEPVAATEYDYQPVSEPATAIGTVSPAVATVAPSPAKPSALINIKIADSRSSTIGPRDALQYTFELPETDQKCRLVGSTKGVGGFGRNIEVFLLTDDEYVFWHANPAAIANSSWETFRGSENTLGYDLPGAGVYHFIVSNEMSATPQSIAVKAQVRCTH*
Ga0062593_1000357984F066982AGGAMIYTGYAMDPQTFEASPIEEMDPIECPACHQVHRWTKRDARFERDPNE*
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