NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066411_1000027

Scaffold Ga0066411_1000027


Overview

Basic Information
Taxon OID3300004177 Open in IMG/M
Scaffold IDGa0066411_1000027 Open in IMG/M
Source Dataset NameFreshwater sediment methanotrophic microbial communities from Lake Washington under simulated oxygen tension - Sediment Metagenome 15_LOW5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22527
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (90.48%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Methanotrophic Microbial Communities From Lake Washington Under Simulated Oxygen Tension

Source Dataset Sampling Location
Location NameUSA: Lake Washington, Seattle, Washington
CoordinatesLat. (o)48.3807Long. (o)-122.1599Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100051Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0066411_100002718F100051N/AMTQRTPTPVLIEAMFTRLLCAVVGHRYVVERVLNHGARKVGCTRCDKHWAMHDGTRAFLLWDEEFEELYAPGGVLAQSDRDLAK*
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Institute for Fundamental Biomedical Research
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