NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1058251

Scaffold Ga0066224_1058251


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1058251 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3603
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029404Metagenome188N
F040869Metagenome161N
F048634Metagenome148N
F066135Metagenome127N
F101914Metagenome102Y
F105877Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0066224_105825113F101914AGGAGGMANNWTCSNCGCVHWDELVPISCIMCDNGTFHDSPDKFYQKETNYIKDKKDD*
Ga0066224_10582513F105877GGAGGMSNHENEMLKENIFDLWVEYLELDGWPKGCNETYAEAARRTESEWLEMS*
Ga0066224_10582514F066135GGAGMNGLRIHNVNNIKVKRDDFQSFTTITVTVTDEANKDFELTLFTDKGFTPNMEVQNEDS*
Ga0066224_10582515F029404GGAGGMKTVDFVEVELGGDNWKITWDVNLRKKIKTTGEKSGLKYTIYSLTDLTPAQAYDIAMVQLEWLKKEQSYVI*
Ga0066224_10582517F040869AGGAGMNMKVFKQVYNELSLLQEEDTDDLNIAEESLMAAMTFTMTNAPSVLNGLCLISNTFNGILAEYTLKDIQFRGE*
Ga0066224_10582519F048634GGAMTPLEAIEETLEVLSQLQLNGSVKLEDSDKMSQCIQQLHSIRFNLKMKDNQNV*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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