Basic Information | |
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Taxon OID | 3300004633 Open in IMG/M |
Scaffold ID | Ga0066395_10006501 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4138 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000083 | Metagenome / Metatranscriptome | 2471 | Y |
F027121 | Metagenome / Metatranscriptome | 195 | Y |
F077568 | Metagenome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066395_100065011 | F077568 | N/A | MPYDMVERSMTAFGEEVMPRIRRVLDRDAAVNHAPPAPPLRLA* |
Ga0066395_100065014 | F000083 | AGGA | MLTLDEITKEKQRVSEALARVDKQREKLIGQLDELEAAERVLARYSKGRRPRKAASSQTPMPTTTATGAVESRGRPRIRAAKPAGRKRRAPSLGDKVLALATGKTRQEITAACKGVRPNHVGVVIARHKRAGRIEERDGKLYAAQSVGAEQRAAV* |
Ga0066395_100065016 | F027121 | AGGGGG | MADQADEVRAMIATLAGSQALILDALRRRGSISEEDIDYILAVTEQGIAKAVGSAGPRGVVQMIRICLQQLSASRETGSSS* |
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