NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066673_10292858

Scaffold Ga0066673_10292858


Overview

Basic Information
Taxon OID3300005175 Open in IMG/M
Scaffold IDGa0066673_10292858 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)948
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024165Metagenome / Metatranscriptome207Y
F054230Metagenome140Y
F092601Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0066673_102928581F054230GAGMNVLFTARQLDRLRELPPDHKLVAGRDGSPILERPDGRLLRVQPNGSLAPAPPVEWVRSYLRVGE*
Ga0066673_102928582F024165AGGAGMARIIVMTDATHLKEGINGTILYAEHVEPEHLDDLYSSEQILERLEGAVRGEEITA*
Ga0066673_102928583F092601AGGAGVETVELSQQQSARIAELPEDYRVVGVDHSATVVRKPTGQILCIQQNGRLTAATIAARRRLATTSPLGD*
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