NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066671_10165554

Scaffold Ga0066671_10165554


Overview

Basic Information
Taxon OID3300005184 Open in IMG/M
Scaffold IDGa0066671_10165554 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007239Metagenome / Metatranscriptome355Y
F099836Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0066671_101655542F007239GGAGLEATSPEAQAELARRHKAAATTVLGLLVGTILLSVIAFLGRPYYTERPNLVLDMAVRIVILVLGLGAVAWRRTKFQAMRLQDIAGLAGVTGLLQTLEKTTMQLALLGAAIALVGFIATLVAGNERYTYWSSAIAVVVFVYCYPTRSSWLRTLYRFTENPVTSVES*
Ga0066671_101655543F099836N/ASFVGNLMQQVSGRADVTVNKNGILISKDGKEGTDLIDEALRYNGTLPANATPEAPTQRSTKPAPAPAVDSKTRNAGTGPSAVKP*
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