Scaffold Ga0073352_1786

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073352_1786

Scaffold Ga0073352_1786

Overview

Basic Information
Taxon OID	3300005220 Open in IMG/M
Scaffold ID	Ga0073352_1786 Open in IMG/M
Source Dataset Name	Norris Geyser Basin Crystal Spring 9 - Microbial communities from the Yellowstone National Park, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	926
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7287	Long. (^o)	-110.714783	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073352_17862	F080245	N/A	MIFVWTAKVVMPGFREEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLNDNLMKQLEDTSIEDLNYPLNTIDHVFT*
Ga0073352_17863	F087442	GAGG	MMREGLVKAGNLIVDCKPCYIAGTGFTKDDMYVVSEGNVVFKWYDKIAVITVSQEGVKITLVDVIDVRFLVERNENCMVTKL*
Ga0073352_17864	F081547	N/A	YYLSCGIVKGGTLDPETYTVNNPELMMVRLGRDLYIVSNDLKQLIPIEPIKELLASETSKVYNEAMMQGNEVKPA*

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