NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073353_1008195

Scaffold Ga0073353_1008195


Overview

Basic Information
Taxon OID3300005225 Open in IMG/M
Scaffold IDGa0073353_1008195 Open in IMG/M
Source Dataset NameHotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5114
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.564833Long. (o)-110.86325Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063403Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0073353_10081956F063403AGGAGGMEQTFDRQEALRALRVAIRSVRRTPIRIPFGDDDRFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPSVITAFRLPAEDDDGNFVQAIYNAEPLPDLPVINLTPADLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMSGDQ*
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