Scaffold Ga0073353_1026062

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0073353_1026062

Scaffold Ga0073353_1026062

Overview

Basic Information
Taxon OID	3300005225 Open in IMG/M
Scaffold ID	Ga0073353_1026062 Open in IMG/M
Source Dataset Name	Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Stanford University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1051
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring → Microbial Communities From The Yellowstone National Park, Bulk Metagenomes As Controls For Mini-Metagenomic Methods

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.564833	Long. (^o)	-110.86325	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F092114	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073353_10260622	F092114	GGA	MRELLSITREELEQLLGENPPKRDTWLLKCRRLREIVSNLPSYQIITTSIPEGHSNLLLINITIKAHAMMQLLRGTAIDFGADNEPFQKQFAEFLASNELALRDAILQRLVVGIGAVCVVGDKQRGWRLQSISPNDLWWDCTTGDVMQPKWIAREYRDTDGTRYREVWYADVYHRYKVDSTDVETQHNPYGVIPIVLFPAHYIPDTVYPIGDVELACPQQFILDEIRRTFLNMARRGAGFFAVKQSSIDETELQRLQNPDEVYILVKEQDAIMPIPTPPPNPEWQALETLAKQDMDALMGISEYVRGVLP

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