NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068637_1107916

Scaffold Ga0068637_1107916


Overview

Basic Information
Taxon OID3300005247 Open in IMG/M
Scaffold IDGa0068637_1107916 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2000_T MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F056643Metagenome / Metatranscriptome137N
F081390Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0068637_11079161F081390N/AMRRDQRLMPPFRAQRCEMLRDALKRQTVKRVGRAVVDVPAQH*
Ga0068637_11079162F004791GGAGGMNKPAEIFDIDAIRVDRAALSIRDAASVLNNELTAPIVARLVRKAIGDQADRFPLRALKRVYERVLPQIFEPDETVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDTIGDEGNE*
Ga0068637_11079163F005302AGGAGGMAHSGVLAGLFAGNFAVEISTNNTTWTAVSNATVKVDDVELNRPSGEAFVGGSSDYATITIGKREPVEITLTFLYNEAANSATNTIFDQFQSTTPRLGVRWSPRGLTSGARAYGTSNDGGATFGLGVITNVTLSTLDPSDPEPYVAMVTVRTPSLRQYALGANPVDLS*
Ga0068637_11079164F056643N/AMGRGVADTAAALADYIEDYVARLRFAWYVRGDVQLLNVSGIIDVIRYGERAYEGVAMTTRFAHLVRAPSP*
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