NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068636_1045156

Scaffold Ga0068636_1045156


Overview

Basic Information
Taxon OID3300005248 Open in IMG/M
Scaffold IDGa0068636_1045156 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1900_T MetaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2280
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming: Yellowstone National Park
CoordinatesLat. (o)44.539Long. (o)-110.798Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F092120Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0068636_10451562F002978GAGGVSVRDWRVTVVPWADRRLWFVQARRGRRVVWGVVYDAADPESVSLARRAIATLRAAGADCSALPHPLPGATPPGA*
Ga0068636_10451563F000642AGGAGMQEMSVALALCAVAAAVWYMRRREAGAGRVTGWLLLYDDVGGWRVLPAAYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHCALERARESAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGER*
Ga0068636_10451564F001381GAGMQYVIATLYVLVWLALAAAAALVLPLWALPAALVQLAVAYVMLRAVWLTVARDDDGA*
Ga0068636_10451565F000855GAGGMDWLEDFWSKVVGWWDHVSANVYNGIVAFINSLVEIWNGWMDALLHPAQAMPSVPELRWIVDWLGDIADYTRLMYMLVDYVAYAAIVQQALVVQLTIVFVGLGFRAWLVLRRIVLVS*
Ga0068636_10451566F092120N/AHGFQDAFPAFVVGLCNFFGIASPVLGFVRLPVTLTVIGFVFWSAWRVFRSLS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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