Scaffold Ga0065705_10107059

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065705_10107059

Scaffold Ga0065705_10107059

Overview

Basic Information
Taxon OID	3300005294 Open in IMG/M
Scaffold ID	Ga0065705_10107059 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	6034
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.794771	Long. (^o)	-84.393804	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018954	Metagenome / Metatranscriptome	232	Y
F086776	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065705_101070591	F018954	N/A	LGDRIRAAASSRIVYRNGVPIMAMEGDMLRTLADADATVLADAAAIAAGRRVPVSHGYVGRIWP*
Ga0065705_101070597	F086776	AGGAG	MADAASTTLHTPWDCRWSRFARRTTREQTRGSLWECVHTGSRVAITEADCASCPLWEYQPTAEGALEQAKACAHAAKDRSARQIEGGIRVSLFVIAVTFAACGFIVLTGPLAVPFTITMWLGAAMSFMAGIFGNFRSHADGTFRGFLPPRA*

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