Scaffold Ga0065707_10559355

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065707_10559355

Scaffold Ga0065707_10559355

Overview

Basic Information
Taxon OID	3300005295 Open in IMG/M
Scaffold ID	Ga0065707_10559355 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	715
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location
Location Name	East Lansing, MI
Coordinates	Lat. (^o)	42.794771	Long. (^o)	-84.393804	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049858	Metagenome / Metatranscriptome	146	Y
F068973	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065707_105593551	F068973	GGAGG	VPPLSEFNTVLNQVLALTEATTTECGLLPPESVERYRCEGKLVALHQVIEFFLAIDRQEFGAKA*
Ga0065707_105593553	F049858	N/A	KNTLPETPIILFTMYTDLHADSLSAFIGVEFVSKTDGVSKLLERVDALLPD*

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