NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066388_100011793

Scaffold Ga0066388_100011793


Overview

Basic Information
Taxon OID3300005332 Open in IMG/M
Scaffold IDGa0066388_100011793 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6934
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014034Metagenome / Metatranscriptome266Y
F039031Metagenome164Y
F065995Metagenome / Metatranscriptome127N
F090815Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0066388_10001179312F065995N/ALKQEVRPEVHNAGFITKPKGVKRDIEWLRRDARRFEIALNRVSKRLINLPMDTDQSLKKAREALSDIVELCNKSLQTISTTSGAPRKPGKVTCALIVIEAFTLVKDRVPSANNSSVQSACEDYWQACGGHASDLANWGRTITTALKDQSAWRRHIRDKIWQGTE*
Ga0066388_1000117932F014034GAGMKKLPCIIAAAVALVVASTAMAEAKKRSLSDKATQSPRSVPAPLRQWPSNNPTYEEYLKLKREGWYKEDKA*
Ga0066388_1000117933F039031GGAGGMNGAVMIIARYHAREAVTRELRAQGIKLIHVEACEITRAANQYVDDHPEIISFATARCEDCVKRGLLKPPRNRSKPSQ*
Ga0066388_1000117934F090815GGTGGMFKRHYAWQVRIQPEGGHFRVYYQHQFPRGVIEEECDPRRFNSLEEAEQFAEDVRRANRIFTALDRGRH*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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