Scaffold Ga0074234_1791

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0074234_1791

Scaffold Ga0074234_1791

Overview

Basic Information
Taxon OID	3300005342 Open in IMG/M
Scaffold ID	Ga0074234_1791 Open in IMG/M
Source Dataset Name	Hot spring viral communities from Yellowstone National Park, Wyoming, USA - Nymph Lake
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4626
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring → Hot Spring Viral Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Nymph Lake, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.7523206	Long. (^o)	-110.7253926	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063846	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074234_17915	F063846	N/A	MRINTDALLGLGAVAVLTAILLFIAWYHTYPQLTCAYVTTHYANHVLTVLVNFTCNGNLYAVWDVNAGNCIYNYNASQQLPTVTNSLISWSNYVAWNFTFTCTKPPGNVTVDLTTPAGAGYAQCHYLLTIPTNTTAAVKC*

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