NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070673_102064737

Scaffold Ga0070673_102064737


Overview

Basic Information
Taxon OID3300005364 Open in IMG/M
Scaffold IDGa0070673_102064737 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007009Metagenome / Metatranscriptome360Y
F060554Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0070673_1020647371F007009GGAGMQARTAFRLAMLRNGFWPLLNDCKRSIEPGWPIKIPDETEVLSWDRSALTSTGLKIDGDLAVIDVDVSEVDFVDALASAFDQSFPELFAHGLVRHAGGPKEAWIARVDVPFVRLASRRWYRGGDPDDPAVPKHL
Ga0070673_1020647372F060554N/AYRPGQTQHVTIHVCVAAGTVDEMKRDRVLGKMSAQEAFKRHLERV*

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