Scaffold Ga0070707_100000160

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070707_100000160

Scaffold Ga0070707_100000160

Overview

Basic Information
Taxon OID	3300005468 Open in IMG/M
Scaffold ID	Ga0070707_100000160 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	64063
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (78.85%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001187	Metagenome / Metatranscriptome	754	Y
F027590	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070707_10000016028	F027590	AGGAG	MADTSTAEPTEQTTVTTPVGDPASDLGDDVLVEEVSIDGMCGVY*
Ga0070707_10000016038	F001187	AGG	MDVDDLQHALGGVVLESAYLERTLRVAFSALIGSKYAAVVGGRLTASALIEDCERLVRYHTAIQAPAKDAVLKTLRACHEANRERNRVIHDTWATRPGNVMVTLQGAGTPHEVTVTVRSLTEASQLAGQIAGAADALRAAMTTALGAGWAQVEDQLRQELGRDISADPGS*

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