NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070707_100000366

Scaffold Ga0070707_100000366


Overview

Basic Information
Taxon OID3300005468 Open in IMG/M
Scaffold IDGa0070707_100000366 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44647
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016136Metagenome / Metatranscriptome249Y
F043335Metagenome156Y
F052498Metagenome142N
F065660Metagenome127N
F072228Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0070707_10000036610F016136GGAGMKRTMTMLLGIFALAISALAVPAVAGAPPTGSVDSSNRVIFNSGSLTGVFEGNVPHVSFYATNQLGRTTYQLNFRALIEFSIGSGEGIYESSMMVARADFDSATWTPSNFYAIKDANTGTTIGMGFNFSLNGPMQIVEQTPPPQSLKPGDVVLVVKAYNNTKIITVNGQSVTINTAEIKIDFVLKNWPFVSTSDKLALQVNLHSDYNHFDLDQSTGTTAVDATNDEGAGVMEHPYTETTNAEQDVRYASGPVTSSMNIGFFHFVNTATVTSATGYTQPVPVVASYKAEKDGPETFLKLYLVYPYFPSGSTLVHDPSFGLQGGLPTLYIIAGGAGIAGLAAVLVIRHRHLQIQKFPKSN*
Ga0070707_10000036614F065660GAGMTTAQKPSPKSRAKLDQVDKKLLSDILAILVILLFAIAAFWRYPVPGVLLAGSLAITVFVAADVVLFRRG*
Ga0070707_10000036628F072228GGAGVLIGPLGFAARSLHRRGFHSHLAFLGLTMTVATTTFLLLLGQDLASRLGVDSSMRSTFGISWLIFAYLVLALGLIGIVGLLSTSYLVSSMISQRMRDIGVIKAAGALPRRLLAYVTFEALVVIVSSCFVGSLSALLIYSSWSWPNVSLFKQVGPISNAGATILIVVPLISFLLSYMVASFRVRRIVGASSVSAISKQLSNLDLKGLGKPLRIRRLGSAFNLATRNVSRDRGFNKTLLSVGICICLSVIVLSGALVSANTSASYVIRAMPPHVLIVANSNIYNQYVSLGTAFSRTATVSSTDYINEPYIITPQNASAFRSIPGVETVDTRLVTISSITGYVEAHFANNQDTGENINTQIIRNRDRLSPNSHSRSRLE*
Ga0070707_10000036629F043335N/AMIAGDSLVGNIVQTPFNLSQVSAFGFRYDIKSALVDPLNAGRVLYAPVQTVQRNLGVAGYNVLLLKVSSDPSVLPAISKLASSFGLEVGSQDPILNSNLAFLNNTWSYIFLIPILALALTCGILLSYLVTNFSRRFNDYAVLKVLGSSARYRLKLLLWEAWGVLAIAMLIAIPVAWGVSIFFLIPDPVVSLADLELSTLVSASALSAVSVASAAIYSRRLGLTTVKDLRT*
Ga0070707_10000036630F052498GAGMLTVIVIIVAVVLGGGVMTFAIGLPSSPCAGVAGAIRSFTIVADINGFNDSVNHQQVSWPVLTVHRCDVVKVTIVNDDTQAHGFAVDYYAQRGTEIQGRQTLPVPAFLATKSGQFRVFCISFCTIHAFMQNGLLNVI*
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