NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068876_10017437

Scaffold Ga0068876_10017437


Overview

Basic Information
Taxon OID3300005527 Open in IMG/M
Scaffold IDGa0068876_10017437 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4575
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F010462Metagenome / Metatranscriptome303Y
F030735Metagenome / Metatranscriptome184Y
F096923Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0068876_100174371F000716AGGMEVDGAGKLAPFIMIYNMKMYKKMEKLKQEIRNYQLNAGKTYMQYESDGYSQYQNYLYKRALYGLNALTQEELASMCSKKKQRILNVYKRAQKVLNVFKQQVTNQYSNYIFKTLFPKSPWTDDMLAYSEVDEKFTNTLTFKDLNISKQDIIGIFITEGILPKNFLSLKEAPVTLPRLKHEVKSM*
Ga0068876_100174373F010462N/AMLYQLPNGKVVHLSIEEYLSLTDLDIQFLMSIDYGEHILDPFTGSAVEKNTREKFIDTDFLPLEDYDLNDIPSDDLPFDDIIDLQDPLDN*
Ga0068876_100174376F030735GGAMANLIFVWYILTGTVQYQQTMDGHKQYALFFEDGKVIDYAYKGEILEYIETGTFEYNEDLELSK*
Ga0068876_100174378F096923N/AMKTIGIVLAWFVFIGVLASFVSCSSTVHCDAYGQTEQVQNKTVSK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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