NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070732_10000029

Scaffold Ga0070732_10000029


Overview

Basic Information
Taxon OID3300005542 Open in IMG/M
Scaffold IDGa0070732_10000029 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)160785
Total Scaffold Genes151 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (79.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022512Metagenome / Metatranscriptome214Y
F038796Metagenome / Metatranscriptome165Y
F040778Metagenome / Metatranscriptome161N
F087498Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0070732_10000029148F040778GGAGMSETVDIQMKRKTARDSSKDKRVLDQIEKWMEMIREISREPVKN*
Ga0070732_1000002965F087498AGGAGMPNVTKIALAAAIVLSTAVAASAATQNHRIVRSHAATYNTAPPIISDACQPVGPPCRTHPDSW*
Ga0070732_1000002978F038796GGAGMVDKITAQRDVEYITELLAKETDENRRVILQRLLADAEKLRQSEDPEENSNKKTAAGQADSKDD*
Ga0070732_1000002979F022512GGAGMTPQAANNKQRLITIYVLIALGFAGLIGAHEISGPDENADLTLPFILAGAGTLCFVAAGLMARRLMKGGGLR*
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