NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049080_10009514

Scaffold Ga0049080_10009514


Overview

Basic Information
Taxon OID3300005582 Open in IMG/M
Scaffold IDGa0049080_10009514 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3367
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F007689Metagenome / Metatranscriptome346Y
F011368Metagenome291Y
F061653Metagenome / Metatranscriptome131Y
F095384Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0049080_100095141F011368N/AMNHSLHHRDIAGASLAPGDHCLVTEHNRLILARVVKCYPASNGVQLQPLNSSAGGRRSKPNQKKIRRECYNVYRLADTEITMSILRGAV*
Ga0049080_1000951410F007689AGGAGMKLFEATVRRPDGSEFKDRVGATDAQEARRLLQERHGPRAVPYMPHMIPS*
Ga0049080_100095143F095384AGGAGMFHTDQQVEFKQTLRRFTDAAYNNYGGHAYAAGYLESMAVQMLAVMSKREQQGFIRAMQDAVKQQQAQAKELV*
Ga0049080_100095145F061653GAGMPYKYKVVTECSSKEHCELDVLGRQILMTTNNYQTARKECIEWAAYDDILVCVTKNIGGVKFSCNGAAEAFDRYPKTAEMV*
Ga0049080_100095146F000354GGAMAKVNYDAFRSFDINECCDHFDSEKQANWKKIGKFIVADGQDYAHVMETEFDFEDTGAGEYEAFEAGVKYALTKMNIAFEAAGLDLEVKQADLVESMGYMLVLADDEPEDFVKRVLKKPVLHVESWV*

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