NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070763_10092418

Scaffold Ga0070763_10092418


Overview

Basic Information
Taxon OID3300005610 Open in IMG/M
Scaffold IDGa0070763_10092418 Open in IMG/M
Source Dataset NameWarmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1514
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001548Metagenome / Metatranscriptome673Y
F047775Metagenome / Metatranscriptome149Y
F069419Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0070763_100924182F069419N/AMAKKKTQKKSAKATLAEVIKEMAKERVAMSARGGL*
Ga0070763_100924184F047775N/AMADDNTDDLCKDCGPTFTAFLEGMAEQNKEQVELNPKVTCPTCGKVHEYTFPYPPKTTVPPASGR*
Ga0070763_100924185F001548N/AMKGIFVMFPVRAILWTVAMAYTGFILTNQGLRTFNSLSVTEAFLGALTGFFLAIMFTLREKRRQRPALVAYSIAQIFPDWDPFHENRNSPPKPKR*
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