NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068852_102696109

Scaffold Ga0068852_102696109


Overview

Basic Information
Taxon OID3300005616 Open in IMG/M
Scaffold IDGa0068852_102696109 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)516
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068788Metagenome / Metatranscriptome124Y
F105277Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0068852_1026961091F105277N/ARTYEDRGGGTIFMTTDVTVPQGSARAFLVYRRDGKPYPEAAVGAESIRMVTVRAVDPRTEDVYFIVDGKTSEKPSTITISGDGMTMTQVVNGTNSKGKPFTNTVVYDKQP*
Ga0068852_1026961092F068788N/AFYHIDDIGIGAMYIALKEMKAKGGPFDEAAKWRLPRDLSSKLIEQETWVTRAKKYGVVQP

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