Scaffold Ga0077776_1222411

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0077776_1222411

Scaffold Ga0077776_1222411

Overview

Basic Information
Taxon OID	3300005753 Open in IMG/M
Scaffold ID	Ga0077776_1222411 Open in IMG/M
Source Dataset Name	Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1530
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum caenipelagi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep-Sea Hydrothermal Vent → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Source Dataset Sampling Location
Location Name	Mid-Cayman Rise
Coordinates	Lat. (^o)	18.375	Long. (^o)	-81.797	Alt. (m)		Depth (m)	2370
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087386	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0077776_12224112	F087386	N/A	MTKSELFEKYKINETHSVWNNNIDNWISVEVYRIMHGGELPKQDDLSVKWICDFLDKKENDFQWWVDVVMTRKDWGSLYLTAKRMIYSHCEQILEELNI*

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