NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005753

3300005753: Microbial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly



Overview

Basic Information
IMG/M Taxon OID3300005753 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0114926 | Gp0118626 | Ga0077776
Sample NameMicrobial community analysis of hydrothermal vent diffuse flow samples from Mid-Cayman Rise, Pacific Ocean - mega-assembly
Sequencing StatusPermanent Draft
Sequencing CenterMarine Biological Laboratory
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size589999552
Sequencing Scaffolds26
Novel Protein Genes31
Associated Families28

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium2
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_221
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae1
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum caenipelagi1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia discariae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Deep-Sea Hydrothermal Vent → Microbial Community Analysis Of Hydrothermal Vent Diffuse Flow Samples From Mid-Cayman Rise, Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationMid-Cayman Rise
CoordinatesLat. (o)18.375Long. (o)-81.797Alt. (m)N/ADepth (m)2370
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001334Metagenome / Metatranscriptome720Y
F003161Metagenome504N
F005815Metagenome / Metatranscriptome389Y
F011620Metagenome / Metatranscriptome289Y
F012083Metagenome / Metatranscriptome284Y
F013484Metagenome / Metatranscriptome271Y
F017326Metagenome / Metatranscriptome241N
F019388Metagenome / Metatranscriptome230N
F023595Metagenome / Metatranscriptome209Y
F023622Metagenome / Metatranscriptome209Y
F024444Metagenome / Metatranscriptome206Y
F036294Metagenome / Metatranscriptome170Y
F043217Metagenome / Metatranscriptome156Y
F043455Metagenome156Y
F044553Metagenome / Metatranscriptome154N
F045766Metagenome152Y
F046978Metagenome150Y
F047906Metagenome / Metatranscriptome149N
F055294Metagenome139Y
F072734Metagenome121N
F074891Metagenome / Metatranscriptome119Y
F079616Metagenome115Y
F085725Metagenome111Y
F087386Metagenome / Metatranscriptome110Y
F094378Metagenome / Metatranscriptome106Y
F100047Metagenome103Y
F105335Metagenome / Metatranscriptome100N
F105919Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0077776_1001314All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1292Open in IMG/M
Ga0077776_1007148All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1411Open in IMG/M
Ga0077776_1007257All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1324Open in IMG/M
Ga0077776_1017976All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium1772Open in IMG/M
Ga0077776_1023412Not Available1762Open in IMG/M
Ga0077776_1027646All Organisms → cellular organisms → Bacteria → Proteobacteria1885Open in IMG/M
Ga0077776_1028620All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1459Open in IMG/M
Ga0077776_1035485All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1123Open in IMG/M
Ga0077776_1038360All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_221628Open in IMG/M
Ga0077776_1044930Not Available1631Open in IMG/M
Ga0077776_1047943Not Available4665Open in IMG/M
Ga0077776_1048993Not Available1190Open in IMG/M
Ga0077776_1049576All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote1210Open in IMG/M
Ga0077776_1075285All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae1317Open in IMG/M
Ga0077776_1083906Not Available2252Open in IMG/M
Ga0077776_1089650All Organisms → cellular organisms → Bacteria1271Open in IMG/M
Ga0077776_1130337All Organisms → Viruses → Predicted Viral1634Open in IMG/M
Ga0077776_1132403Not Available1099Open in IMG/M
Ga0077776_1153706Not Available1134Open in IMG/M
Ga0077776_1160506All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Hexacorallia → Scleractinia → Astrocoeniina → Acroporidae → Acropora2529Open in IMG/M
Ga0077776_1165883Not Available1789Open in IMG/M
Ga0077776_1181278All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae2540Open in IMG/M
Ga0077776_1183525All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2518Open in IMG/M
Ga0077776_1208765Not Available1155Open in IMG/M
Ga0077776_1222411All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Tenacibaculum → Tenacibaculum caenipelagi1530Open in IMG/M
Ga0077776_1238699All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia discariae1842Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0077776_1001314Ga0077776_10013141F074891MSAVTHDVVPKIKTRKKRAKGVAALRKIRRALARKKLEEMHEEKILKENIYDVFSDEDDPINI*
Ga0077776_1007148Ga0077776_10071484F100047NLMASTVSSSFVCPATVSKLVSVEVCTTADASEEFGVLIRLSGNSLSDGEQYVAGGANVASTTATGTAMNYVSKDTDFNVISGNSIECAIATTDAAVISATVVMTFA*
Ga0077776_1007257Ga0077776_10072571F055294VPKKKTTKMLEPETGAPSLPVSEGTIGVEYTPPPVGEREETQKYLCANCQGEIELRSPRCQTCNESIDWSSLDD*
Ga0077776_1017976Ga0077776_10179763F024444MVAPVAARAAANTDTTMLLVGAGALLLLAKWGIGNIPNIPNPLPAAGRAVAKTADELTGGLQKGRDETITEWFFEVDVPFSDKRFPIAPGLVRERGDVYTTEGPGPGGQMGDVPWTAMDIVEPDQPWGSYFFEIDLPGVPAYDVRDAPADLYRSTIGRVLR*
Ga0077776_1023412Ga0077776_10234121F023595DFGSEQGLSNFETGGIAVGYVEDFKIAKTPLWAKRCCL*
Ga0077776_1027646Ga0077776_10276462F005815MTMEITRLTTYWTTHEADTVIDLLDRLRDALWETYGDQIIQIHRETCDDGIPDPNQCELPFNDDIPF*
Ga0077776_1028620Ga0077776_10286202F105335PDATGFGQAPRVLCLDWSEAGLIGGTSTGYVFRLPSGQGDWQPLHREKASPVYALGQAPGQIVAGKTAQLLKLPKP*
Ga0077776_1035445Ga0077776_10354451F105919NPEKGDKKSAFMADKRRTSTTQKGDILSEKADMGVQKGGHSYVPPTISNHQLNIKEPSEDGATANFDYPEWFQPLTALKGFKSIAHKNAIISVREGCEEAGVNEAEIVLAFADYYRDGGRATNGWSDPVAALVRTLPVQINKTRKTGKTGKTGKTGKTGNRPPPKVFSVNSQDFAAMKAEQDARKARG*
Ga0077776_1035485Ga0077776_10354852F003161LSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWIQSRTNGWQTLGDIGSTTTIMVRAYFRLQVSVDVRESIELELWDAMVEVDSKLRSDANLAGNCTDSTVGSATVATMDMGGSLYRTATIPFDLQIYEEVTITP*
Ga0077776_1038360Ga0077776_10383603F012083MTRLGDPPPGNQASGSDSAARRRLADSRTVLGGKGSLRRAKSGRALASCAPFCRTIIRDGRLRREPDAQQFLCLTKDKNQMRVDKTS*
Ga0077776_1044930Ga0077776_10449302F047906VALAAKFTQKRTVTKEHTPDAIRVPVAHRPVVGLGVLAVRWHHAVTKVRVALRLDMLAVAKRVSRVEIKFAVTAKAGLVQTQRLAVANAVVIRIVVAERVA*
Ga0077776_1047943Ga0077776_10479431F094378MQRRRSNHPGNSQAKGPCIITLERRLGLTEGVNLSGNKTEGVD*
Ga0077776_1048993Ga0077776_10489931F045766MREAQEQLERVIARMQAIQTTIKASGQPASMFELGELKDLGREYARLVDDLANTSAGPWA
Ga0077776_1049576Ga0077776_10495763F043455MRKETVEEYLRRGKTITKIPQVLDTIGSIWNQQGIGADKDRHDHKKFGIRLMDWKSMQPDIRFDTEDDDRKYWNQLNKRCDKLIKKIKKEQKKT*
Ga0077776_1049576Ga0077776_10495764F017326MIMNDYEKVKIEINESVTSDNFKEHLRKEYHNSFDEYMEDTRGIDLDVFYEERSIPISELVPKGMTIKEYFGKEQRLLREENISYVKFD*
Ga0077776_1075285Ga0077776_10752853F005815MTMQVTRLTTYWTLDAAATAIDFLDVLRNALWETYGEQITEMYRETCDTRIQDINQCELEFDDDIPF*
Ga0077776_1083906Ga0077776_10839063F023622MKTFKEFQGETPTQIVEQVYFKIRIPDMSTMFMKASSESAVKLDMRQKLKPDVVKEVSIERVTKAEMRKIYRAMGQGKEDEKEPAEEK*
Ga0077776_1089650Ga0077776_10896502F001334MMKFKEYLQLNADDSIEQIMNGEWIQKSRSTWKATDDEDNKIEIHNDGHDPELNGESWTVHTNTFAPKAFAYFTKQFIKEVKPSEVTHARTRIYPSTSN*
Ga0077776_1089650Ga0077776_10896503F044553MPEQESIHQLQTEIQTLKIKDEFRTKELDALMKKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVD
Ga0077776_1130337Ga0077776_11303371F046978MAKTKKVTVSMTEETKQKALYLSVLVLGTENISGYISYLINKAHLEAKK*
Ga0077776_1132403Ga0077776_11324032F019388MRTPNEQNPYLVETKNGQILKFSKIDADNEAAIKQLDGDDVEVFHDGKLQYKLHGIEQGKLF*
Ga0077776_1132403Ga0077776_11324033F011620MFDKILQAVLEFFGKEKPELPTEENNESLEALERIEALDKIGESS*
Ga0077776_1132403Ga0077776_11324034F072734MSMMKFDGSKIKEIRKRKEQGLPPPPTDGDVVEQSKNAKGGSELIYQRVKKRVPDDLWNYFQIILSRVREYEDKPKILWF
Ga0077776_1153706Ga0077776_11537062F036294VTVMDKGFSDEAVVGVKSVADEDVVAYLRVKLPESDSNV*
Ga0077776_1160506Ga0077776_11605062F043217VVIELRVVQFWSEIKLAITNRTPATRSCNFVIARLISDQIALHSVQLHYKFQAEYPE
Ga0077776_1165883Ga0077776_11658831F013484MDIHLEFSGRTLSTEHQAIVDALNEFLAWLPDGEDPNAALRLAMMILEAANVAPQAVLAQAVGFGQDRSVRVYKQRLREEGLSGLFDHPIPGRPALTTKTEVEKALLRVILSAVIEEHALPDDVTLAEGVNRILREAQEPEAGHVTASMIEAIRLRWGIQRPTLVRQLQATQLAATAERAQMRLGQTRVGGAFILAVLLVETGWLKLAYLLPMAANYAVTAVQWLLTAIFAVIFGVQRAFHLDDVRDIGFALVTGRPRPLTHGTFQHLLHAIPKEKAQAFYAASAQLEVQALGEGPRRISLDGHNLPRYTRLVDLPKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYRGTKKLSQGLVEMVREILKHRGDIPGRLRVFFDKGGYSGQIFRDLAEESQVRFYTPAVRYPANVELWEQLKDSDFDPEPFAFDKHADLPPDRRPVYRLADTEMTLNVRADRKVVDTVTLRAIVLHDPQGEKPAERWPVVFLTDDRDIDARALLNEFGDHWGQEFAHRIGKHDLCLDILPPGYVLKTRQ
Ga0077776_1181278Ga0077776_11812781F079616MNDTFKIGEIVVCVNAKRRWYRLGGLQEDEMYTVTGFNPYDGGLILKEVKSPRSGYNAFAACRFRKVYYNFASNVLEEVQPKEYGIAAITNYELSMLN*
Ga0077776_1183525Ga0077776_11835252F005815MTMNNTRLTTYWSSDDAATVIDFLDLLRDALWETYGDQITQMYREAYDDRFQDPNQCELEFDDDIPF*
Ga0077776_1208765Ga0077776_12087651F085725PITFNCNKVTRDIMNLLFVSIVLLITAVSLGLYLVFLGLHKHKSSPGLGLTHASFALAGIIVLFMQIYTGPTDKLNNFAALFLIFALVGGGMVFALREENKPPSMMVVIIHAIMGLAGVSSLLINLV*
Ga0077776_1222411Ga0077776_12224112F087386MTKSELFEKYKINETHSVWNNNIDNWISVEVYRIMHGGELPKQDDLSVKWICDFLDKKENDFQWWVDVVMTRKDWGSLYLTAKRMIYSHCEQILEELNI*
Ga0077776_1238699Ga0077776_12386991F013484FHFPDGTLSTEHQALVEALNRFLAVLPDDEDQEVVVRLVMELLELADVASQGEIARAAGYSERTLRFYKRRLHDEGLGGLFDHPIPGRPAVSTQPAVEGAVVQAIVEAIITQHTLPDDAALAEAVNHHLADKKDPSAGQVTTSMVETIRLGWGIKRLPVRQQLQDAQTSPAPQQEMVHLGRTRVGGAFILAVLLVEEGLLRFAHLLSMAPGYAVTSVQWLLTAIFSVICGVERAFHLDDVRDIGFALLTGRPRPLSHSTFQHLLHAIASWDAIRFYLATARQAVRKVGEGTRRISLDGHVLPRHTKLVELAKGRIASTGRVLKAEELISAFDLDAGSFLALRVRQGGKNPTHVLLALVKELCMHRRGLEGLLRLFFDRGSYKGFIFEALSKLDNVHFYTPAVRYPTNVEQWEALTEEDFEPDPFVFDKHADLLPEEQPRFRLADITMEINIWEGKRLTGTVEVRAIVVHDPQGQTPKERWPFVLLTDDRDTPARELANEWGDHWGHEFAHRVGKHDLCLDILPPGYTLTTTRDEQGRLQRQVEYDTASFFLSAWLRCLVFSLMTLFGQALGGECANMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQEEL
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