NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100028312

Scaffold Ga0066903_100028312


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100028312 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6250
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051757Metagenome / Metatranscriptome143Y
F070614Metagenome / Metatranscriptome123Y
F099630Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1000283122F070614AGGAMTNLEPVAQDKREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVPHEQEAAP*
Ga0066903_1000283127F099630GAGGLARLLSRQQMLTVTDVSASVFDRMINRGGMALTFGVPRAIVRDRYVSTDPVYARAVIEFGRQFRVPQPVIAALVRLDNITVLDGIVRAEAHPELQLGLALIQGADQMQLMCGTDDELRAFLVGPPLEGRLRRPARLDQVTVINLTGLILNIHRQAAKKKIDLGVPLFMTPDNPRYQELRRELLEIREADTKTVQKAAAFAALRERITSHVAIQ*
Ga0066903_1000283128F051757GAGGMKEVRSRLNRDYRLQNIGSRLQQNLTKAVLSGAKVIERVLVDNLTETAAYKLEYDQLREYVFAGKRDQLWNVIPASIQTPQELQGFTEHLQRNLNSRDRWIRYFSERTLAALIGGQQ*

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