NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078197_123226

Scaffold Ga0078197_123226


Overview

Basic Information
Taxon OID3300005767 Open in IMG/M
Scaffold IDGa0078197_123226 Open in IMG/M
Source Dataset NameHuman lung microbial communities from HIV infected subject HIV3-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNew York University Langone Medical Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)524
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Respiratory System → Lung → Unclassified → Lung Microbiome → Human Lung Microbial Communites From Healthy (Non-Smokers And Smokers) And Hiv Infected Subjects

Source Dataset Sampling Location
Location NameNew York City, New York, USA
CoordinatesLat. (o)40.7127Long. (o)-74.0059Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077438Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0078197_1232261F077438N/ADEPSFRKSRFETLFLWSFHVEISIALRPKVEKETSSYKN*
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