Scaffold Ga0079640_1065321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079640_1065321

Scaffold Ga0079640_1065321

Overview

Basic Information
Taxon OID	3300005801 Open in IMG/M
Scaffold ID	Ga0079640_1065321 Open in IMG/M
Source Dataset Name	Sediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13 with enrichment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oak Ridge National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	915
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Thermal Hot Springs → Sediment Microbial Communities Of Hot Springs In Rotorua, New Zealand

Source Dataset Sampling Location
Location Name	Rotorua, NZ
Coordinates	Lat. (^o)	-38.0631325	Long. (^o)	176.360798	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103293	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079640_10653212	F103293	GGAGG	MGYIPEDLQKLEELPAPYEIFEFVPGVPAYFEVTDYKIGRIAIHPRWPGAPEEKTIVAIRLYVTPKCKPSYPPYWDITPARLVYALAPILASGKWRGYWLRIVRDIPGPKAHFQVSIVTGPEE*

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