Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1004339 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1004339 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11788
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (84.85%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

11788

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (84.85%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (90.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002060	Metagenome / Metatranscriptome	597	Y
F003582	Metagenome / Metatranscriptome	478	Y
F004666	Metagenome / Metatranscriptome	428	Y
F074876	Metagenome / Metatranscriptome	119	Y
F084138	Metagenome / Metatranscriptome	112	Y
F105019	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100433910	F001280	AGGA	MCVECGCENVGSETGMSKIPGGMLDVTRDGEAGLTLNMTASQQERLRFINE*
Ga0079957_100433913	F105019	AGAAG	MGKHHDKIEASLEIRKRNHKGPGGKVPGSMNKKKTGYNRVRANRSK*
Ga0079957_100433920	F084138	GGAG	MANQVTILEEIIGDVAIALYQKWYNAMPQDEKNESSESALKKNAQETTLFIIQMFMDKFNKAAEELKNQD*
Ga0079957_100433925	F002060	GGA	MIIGLAAAILSGMGTALIVALKEHKKEKIRRAEREQDHLKMDIKDLKISLYKLEKELTDWKDKYYNAIQELIAVKSELENALVQLNIIEFKDLDSEY*
Ga0079957_100433926	F000671	GAGG	MDKILCYSCSKSKHKLNAKKSSLLPINLLMCESCINAKFEPRWLIILAGRSNGADSVREFVLKKKYIGNEISASELLV*
Ga0079957_100433927	F074876	AGGAG	VQEFYEIINVVYIYEEKTHGTVDNLGAFASVVKYQKDGIEYEELLENDEFAIVDEIVFHHVEENNG*
Ga0079957_100433928	F000473	AGGAG	MSSNHFYDNKHFKYGINQWTGEPNKPVFYNEEMKKKIRELKQPGMLLMDIAMYPDFLAIRLYEDNFLQFDGIKKEQAIAYIDKVKKVIESFGVRCELEGVPSARVL*
Ga0079957_10043393	F004666	AGGA	MATKREYLVSKGITVGRRGRFSAAAKQALSEAEKNGIKFSAEVKQGKN*
Ga0079957_100433932	F003582	N/A	MNVYKVKLEIDAEVEAFSEDDAVDYMNDIFGIDDEVKSVKVVSVKEK*
Ga0079957_10043399	F001176	GAG	MSDGTGMVPPPNSEPSGAVTSQEVGRKKPNQGKFRSGIQDKRSIVVDRNRHGIRRETTVVPKKTRPKKV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1004339

Overview

Ecosystem & Geography

Associated Families

Sequences