Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1020052 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1020052 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4701
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

4701

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (35.71%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011134	Metagenome / Metatranscriptome	294	N
F018323	Metagenome / Metatranscriptome	235	N
F027744	Metagenome / Metatranscriptome	193	N
F028416	Metagenome / Metatranscriptome	191	N
F045532	Metagenome / Metatranscriptome	152	N
F050893	Metagenome / Metatranscriptome	144	Y
F073465	Metagenome / Metatranscriptome	120	N
F085117	Metagenome / Metatranscriptome	111	N
F089846	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10200521	F045532	AGG	METLDLIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKDKSIIHRLMIYLIYLEVNPRIRIIENLNYSVMIIRLGMLSMSLEQIILNPNMEIAHAIILIHLIIVAAYLPNYIDTQEAIAKTISYFI*
Ga0079957_102005210	F085117	N/A	MEQKLTTKEVDKSQEIARCRKSISETTVLLREKIQLLTVLFNKLSILERNLIGEELMGVFGNSMRMIHDISRNLEIPVKTAVAKALFID*
Ga0079957_102005212	F027744	N/A	MNSTVRKSKNKPYEPSVSNSGQRVDPALPLTIAERDAVARGVVRFNQQRQYRKGRLDNLLEALDTRHGTVFDPGNIEILIEIFNTVGLIKCAFPDKSIKWELPTHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL*
Ga0079957_102005213	F028416	AGGAG	MNEQPINGHAIVNRPERHPNVFRIRRTWLKVANEALDLLNLIDVTQPNTAADNSLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC*
Ga0079957_10200523	F073465	N/A	MSNWRYRWRRPRPRYRPAPPAPRIEAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIISHQVDDQGFSELENDSETEPLVSDV*
Ga0079957_10200524	F089846	N/A	MDSNQNIFRNINKAIRAITPGVYNNAQVENLMKIYDVIVAEKEVNPSWQLPSPETRKRKKPRLK*
Ga0079957_10200525	F011134	N/A	MSTFAELEENYDSKETLVDTIKTDLIRQFKMCVDNINTEIIIINENNVEQYEDLNEVLINLRRLDSKWNINSNSDKPWKFKYMLEENLRRRILEIDISDLDTIDIDGYEKFHDALRDLRIEDPGWSINNTRRSFLVLLTSEDIGLMNNHLESREK*
Ga0079957_10200527	F018323	GAG	MCNNKYTEEVAELIKSLEENSVDLTSAIDTVRVLDELELPLFEHILINQICKDLNAITTEINHDQEDERVFRKIFHKVRVLKLRNPTWKFKQRAKKSAYSKRRMIEEERLTLSQEEARELAKFERETEIINQINIEKSFEENRHLFKLIKESRFTRVGRRTWLSFYRFPDLNRLTVHNGKHFLCKVDGTGSRKYSRLKWSIVL*
Ga0079957_10200529	F050893	N/A	MEEIRTVTNEIEDLVTLLLVQKESLEEKEEADPSKGSIQKTLLAIKQLNKKLEAILGNERLKMTEKPKTEVREKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1020052

Overview

Ecosystem & Geography

Associated Families

Sequences