NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079995_1044107

Scaffold Ga0079995_1044107


Overview

Basic Information
Taxon OID3300005858 Open in IMG/M
Scaffold IDGa0079995_1044107 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (SPADES assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5432
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069506Metagenome124N
F080678Metagenome115N
F088087Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0079995_104410710F088087AGGTGGMKASDGSVWLPVTESSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFIAGGDA*
Ga0079995_10441076F069506GGAGGMQLTHTEERIKQAIEEVWQELLQEADAENYSLEEYFEDYRKYWDDPCFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLDQIQSALADA*
Ga0079995_10441079F080678GGAGGMFVRKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLHGISAGKFMRKLQKLGVTWSFNRDVVRRSVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
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