Scaffold Ga0080004

Basic Information
Taxon OID	3300005860 Open in IMG/M
Scaffold ID	Ga0080004_1144126 Open in IMG/M
Source Dataset Name	Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005860 Open in IMG/M

Scaffold ID

Ga0080004_1144126 Open in IMG/M

Source Dataset Name

Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25037
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (92.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

25037

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (92.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Washburn Spring, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Washburn Spring, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0080004_114412625	F092976	GGAGG	MMQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAEGDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEELK*
Ga0080004_114412627	F088087	GAGG	MKKVSDGSVWTPVTVSSAPCEICGRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGDE*
Ga0080004_11441263	F084856	N/A	MMERGDAMSDLSNLMIVTHLYTKEHAEALLQTLPAWRKLAPSSQIIVGYYQSRLQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLFKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSRNCNPVRYVKSEAQADRKSNKPFGRR*
Ga0080004_114412630	F100012	AGGAGG	MDREKVLQALREAQAEYNIENLDEFTKQAWEEGNILDAEIVAELTERAVEILFDQHFLWVHIIESEDCEEWIPDGWYSFVAVHPKTHQCLTVLEDPVYSWESRASFSARIRSAEDAIDAVTRLAELIEQNLKGRAVE*
Ga0080004_114412631	F069506	GGAGG	MQLEQLPYTEEQIKQAIEEAWQELLQEADAEDYSLEEYLEHYRKYWDDPDFPNDIPEIIMRAVEEIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVVDYEGIVRLVTKLLNQIQSALADA*
Ga0080004_114412632	F086364	GGAGG	MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPWTVEEAVEALTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILEIEDAVQAVEYFLRLVQQA*
Ga0080004_114412637	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWSLSCSVEDIAPGTLAEIVIRTVEALLGLQWRLEWDYDADADDMVLSSGAATYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFGDAAQAVVDLADIIAEKLLVVRSQVLSLKEVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0080004_1144126

Overview

Ecosystem & Geography

Associated Families

Sequences