NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070743_10011182

Scaffold Ga0070743_10011182


Overview

Basic Information
Taxon OID3300005941 Open in IMG/M
Scaffold IDGa0070743_10011182 Open in IMG/M
Source Dataset NameEstuarine microbial communities from the Columbia River estuary, USA - metaG S.697
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3163
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F009685Metagenome / Metatranscriptome314Y
F013414Metagenome / Metatranscriptome271Y
F033433Metagenome / Metatranscriptome177Y
F090386Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0070743_1001118210F000263GGAMTPEDIGLPPHLQRMVNYNVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMDRTRCEGALDTLVELYNLTYQLSFAIGVRSENLKDGH*
Ga0070743_100111823F090386GGCGGMAYSRFWDSDIYIYPSVGGWIECAGCFLNIPTDEHTIFQSTKIYDDETLLMHIVQHRISGHNIPENLEAEILRDPERYGILEQ*
Ga0070743_100111825F013414AGGCGGMKTPEQKVAEQLTNLTEDHWFNAASLARYLTDQPYYTTDRIMELVAQIIKWGGRRHEDELTPSGVYQSNSSSEGLFLANELSKTLDELTKTYQWDNLKLPVDSKKAIAKLPKVAEQSYRHSWIHDTDNRVRVTIDHPFI*
Ga0070743_100111827F009685AGGAGGMKMSDQHIDAVLTKAQKLLWGGSETENIEAHNLISNLIRDRMSEKNLK*
Ga0070743_100111829F033433AGGAMNTKPSLEILEVNYSCSPGGVDEFEVYSTDERDFADYPLYSSESLAKAVEYCYQLGKDFTVRTLAEWEERELAYEASR*
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